Visualizar Tese - Instituto de Biociências - Unesp

Visualizar Tese - Instituto de Biociências - Unesp Visualizar Tese - Instituto de Biociências - Unesp

10.07.2015 Views

INTRODUCTIONUterine Leiomyomas (ULs) are the most common benign tumors of reproductive ageaffecting 25-30% of women [1]. The ULs are smooth muscle tumors, often multiple tumorsare found in the same uterus [2]. Although they are extremely common and represent animportant public health problem, the biology of these tumors still remains unexplained. Themajority of tumors are asymptomatic which only one fourth of individuals have clinicalsymptoms such as pelvic pain, abnormal bleeding, infertility and pregnancy complications[3]. Estrogen and progesterone are the most critical regulators of fibroid growth [4, 5]. Inaddition, growth factors [6], deregulation of microRNAs (miRNAs) [7], shortening oftelomeres [8], excessive production of disorganized extracellular matrix [6, 9], genomicregions with loss of heterozygosity [10] and recurrent chromosomal aberrations [for review11] have also been suggested to contribute to the growth of fibroids.Around 50% of ULs harbor chromosomal rearrangements involving a small number ofnonrandom chromosomal regions [for review 12]. Gene expression profile studies revealedmainly genes involved with cell proliferation, cell cycle, differentiation and extracellularmatrix production [for review 13]. However, few studies have associated copy numberalterations (CNAs) with deregulated gene expression in ULs [14, 15, 16]; these studies havingused indirect correlation analysis.Identifying genes as drivers (modulators) of tumorigenesis is a crucial challenge. DNAcopy number alteration is the one of several events that can regulate gene expression [17].Recently, studies using integrative analysis of genomic and transcriptomic data of cancer haverevealed genes mapped at CNAs regions with an aberrant gene expression [18, 19]. Theseevents could be underlying mechanisms of disease evolution and reveal new potentialcandidates for therapeutic intervention [20].3

Thus, these findings prompt us to investigate the genomic and transcriptomic profilingin ULs using CONEXIC, an algorithm recently described [17]. In addition, functionalanalysis of networks and canonical pathways of modulators was applied to uncover molecularpathways involving in ULs pathogenesis that can be useful to select molecular markers anddefine target therapies.MATERIAL AND METHODSTissue sample collection. Fifty-one fresh ULs samples were collected from 34 patientsand stored at -80°C. These samples were collected from patients that undergone tohysterectomy procedure at the Department of Gynecology and Obstetrics, School ofMedicine, Sao Paulo State University, São Paulo, Brazil, between October 1995 and February2004. All the patients were advised of the procedures and thus provided informed consent.This study was approved by the Institutional Ethics Committee 146/2007-CEP.Clinical and histopathological parameters. Nine patients (n=9) had one UL tumor.Twenty-five patients had multiple tumors: 13 of them had one sample evaluated (n=13),seven had two samples evaluated (n=14) and five had three samples evaluated (n=15). Allwomen were premenopausal, showing regular menstrual cycles prior to diagnosis of UL, andthey no received exogenous hormones or hormone suppression therapy at least three monthsbefore surgery. At surgery, 13 patients were in proliferative menstrual cycle phase and 21 insecretory period [21]. The medical records from patients were examined in 2011 to retrieveclinical and pathological data (Table S1). The age ranged from 35 to 51 years with mean age45 years. All of the tumors were histopathologically diagnosed as usual ULs.Array CGH. Genomic DNA from 51 ULs were prepared by standard sodium dodecylsulfate/proteinase K digestion followed by phenol and chloroform extraction and ethanolprecipitation and were stored at -20°C. The samples were treated with RNaseA 20µg/ml4

INTRODUCTIONUterine Leiomyomas (ULs) are the most common benign tumors of reproductive ageaffecting 25-30% of women [1]. The ULs are smooth muscle tumors, often multiple tumorsare found in the same uterus [2]. Although they are extremely common and represent animportant public health problem, the biology of these tumors still remains unexplained. Themajority of tumors are asymptomatic which only one fourth of individuals have clinicalsymptoms such as pelvic pain, abnormal bleeding, infertility and pregnancy complications[3]. Estrogen and progesterone are the most critical regulators of fibroid growth [4, 5]. Inaddition, growth factors [6], <strong>de</strong>regulation of microRNAs (miRNAs) [7], shortening oftelomeres [8], excessive production of disorganized extracellular matrix [6, 9], genomicregions with loss of heterozygosity [10] and recurrent chromosomal aberrations [for review11] have also been suggested to contribute to the growth of fibroids.Around 50% of ULs harbor chromosomal rearrangements involving a small number ofnonrandom chromosomal regions [for review 12]. Gene expression profile studies revealedmainly genes involved with cell proliferation, cell cycle, differentiation and extracellularmatrix production [for review 13]. However, few studies have associated copy numberalterations (CNAs) with <strong>de</strong>regulated gene expression in ULs [14, 15, 16]; these studies havingused indirect correlation analysis.I<strong>de</strong>ntifying genes as drivers (modulators) of tumorigenesis is a crucial challenge. DNAcopy number alteration is the one of several events that can regulate gene expression [17].Recently, studies using integrative analysis of genomic and transcriptomic data of cancer haverevealed genes mapped at CNAs regions with an aberrant gene expression [18, 19]. Theseevents could be un<strong>de</strong>rlying mechanisms of disease evolution and reveal new potentialcandidates for therapeutic intervention [20].3

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