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Ссылка - Биолого-почвенный институт ДВО РАН

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14<br />

СПИСОК ЛИТЕРАТУРЫ<br />

1. Глубоковский М.К. Эволюционная биология лососевых<br />

рыб. М.: Наука, 1995. 343 с.<br />

2. Evolution Illuminated. Salmon and their Relatives /<br />

Eds. Hendry A.P., Stearns S.C. N.Y.: Oxford Univ.<br />

Press, 2004. 510 p.<br />

3. Volff J.-N. Genome evolution and biodiversity in teleost<br />

fish // Heredity. 2005. V. 94. № 3. P. 280–294.<br />

4. Davidson W.S., Koop B.F., Jones S.J.M. et al. Sequencing<br />

the genome of the Atlantic salmon (Salmo salar) //<br />

Genome Biology. 2010. V. 11. № 9. P. 403.<br />

5. Koop B.F., Schalburg K.R. von, Leong J. et al. A salmonid<br />

EST genomic study: genes, duplications, phylogeny<br />

and microarrays // BMC Genomics. 2008. V. 9. P. 545.<br />

6. Li J., Xia R., McDowall R.M. et al. Phylogenetic position<br />

of the enigmatic Lepidogalaxias salamandroides<br />

with comment on the orders of lower euteleostean fishes<br />

// Mol. Phylog. Evol. 2010. V. 57. № 2. P. 932–936.<br />

7. Yasuike M., Jantzen S., Cooper G.A. et al. Grayling<br />

(Thymallinae) phylogeny within salmonids: complete<br />

mitochondrial DNA sequences of Thymallus arcticus<br />

and Thymallus thymallus // J. Fish Biol. 2010. V. 76.<br />

P. 395–400.<br />

8. Wang Y., Guo R., Li H. et al. The complete mitochondrial<br />

genome of the Sichuan taimen (Hucho bleekeri):<br />

repetitive sequences in the control region and phylogenetic<br />

implications for Salmonidae // Mar. Genomics.<br />

2011. V. 4. № 3. P. 221–228.<br />

9. Шедько С.В., Мирошниченко И.Л., Немкова Г.А.<br />

Филогения лососевых рыб (Salmoniformes: Salmonidae)<br />

и ее молекулярная датировка: анализ ядерного<br />

гена RAG1 // Генетика. 2012. Т. 48. № 5.<br />

С. 676–680.<br />

10. Oakley T.H., Phillips R.B. Phylogeny of salmonine fishes<br />

based on growth hormone introns: Atlantic (Salmo)<br />

and Pacific (Oncorhynchus) salmon are not sister taxa //<br />

Mol. Phylog. Evol. 1999. V. 11. № 3. P. 381–393.<br />

11. Osinov A.G., Lebedev V.S. Genetic divergence and phylogeny<br />

of the Salmoninae based on allozyme data // J.<br />

Fish Biol. 2000. V. 57. № 2. P. 354–381.<br />

12. Шедько С.В. Филогения митохондриальной ДНК<br />

лососевых рыб подсемейства Salmoninae: анализ<br />

последовательностей гена цитохрома b // Генетика.<br />

2002. Т. 38. № 3. С. 357–367.<br />

13. Phillips R.B., Matsuoka M.P., Konkol N.R., McKay S.<br />

Molecular systematics and evolution of the Growth<br />

Hormone introns in the Salmoninae // Env. Biol. Fishes.<br />

2004. V. 69. № 1–4. P. 433–440.<br />

14. Crespi B.J., Fulton M.J. Molecular systematics of<br />

Salmonidae: combined nuclear data yields a robust<br />

phylogeny // Mol. Phylog. Evol. 2004. V. 31. № 2.<br />

P. 658–679.<br />

15. Matveev V., Okada N. Retroposons of salmonoid fishes<br />

(Actinopterygii: Salmonoidei) and their evolution //<br />

Gene. 2009. V. 434. № 1–2. P. 16–28.<br />

16. Avise J.C. Molecular Markers, Natural History, and<br />

Evolution. MA: Sinauer Assoc. Inc., 2004. 684 p.<br />

17. Berg W.J., Ferris S.D. Restriction endonuclease analysis<br />

of salmonid mitochondrial DNA // Can. J. Fish.<br />

Aquat. Sci. 1984. V. 41. P. 1041–1047.<br />

ШЕДЬКО и др.<br />

18. Nelson J.S. Fishes of the World. New Jersey: John Wiley<br />

& Sons, Inc., 2006. 601 p.<br />

19. Crow K.D., Wagner G.P. What is the role of genome duplication<br />

in the evolution of complexity and diversity?<br />

// Mol. Biol. Evol. 2006. V. 23. № 5. P. 725–732.<br />

20. Van de Peer Y., Maere S., Meyer A. The evolutionary<br />

significance of ancient genome duplications // Nat.<br />

Rev. Genet. 2009. V. 10. № 10. P. 725–732.<br />

21. Santini F., Harmon L.J., Carnevale G. et al. Did genome<br />

duplication drive the origin of teleosts? A comparative<br />

study of diversification in ray-finned fishes // BMC<br />

Evol. Biol. 2009. V. 9. P. 194.<br />

22. Ward R.D., Zemlak T.S., Innes B.H. et al. DNA barcoding<br />

Australia’s fish species // Phil. Trans. R. Soc. B.<br />

2005. V. 360. № 1462. P. 1847–1857.<br />

23. Sevilla R.G., Diez A., Norén M. et al. Primers and polymerase<br />

chain reaction conditions for DNA barcoding<br />

teleost fish based on the mitochondrial cytochrome b<br />

and nuclear rhodopsin genes // Mol. Ecol. Notes. 2007.<br />

V. 7. № 5. P. 730–734.<br />

24. Brunner P.C., Douglas M.S., Osinov A.G. et al. Holarctic<br />

phylogeography of Arctic charr (Salvelinus alpinus<br />

complex) inferred from mitochondrial DNA<br />

sequences // Evolution. 2001. V. 55. № 3. P. 573–586.<br />

25. Yamamoto S., Morita K., Kitano S. et al. Phylogeography<br />

of white-spotted charr (Salvelinus leucomaenis) inferred<br />

from mitochondrial DNA sequences // Zool.<br />

Sci. 2004. V. 21. № 2. P. 229–240.<br />

26. Hillis D.M. Taxonomic sampling, phylogenetic accuracy,<br />

and investigator bias // Syst. Biol. 1998. V. 47. № 1.<br />

P. 3–8.<br />

27. Wiens J.J., Tiu J. Highly incomplete taxa can rescue<br />

phylogenetic analyses from the negative impacts of limited<br />

taxon sampling // PLoS ONE. 2012. V. 7. № 8.<br />

e42925.<br />

28. Roure B., Baurain D., Philippe H. Impact of missing data<br />

on phylogenies inferred from empirical phylogenomic<br />

data sets // Mol. Biol. Evol. 2013. V. 30. № 1. Р. 197–<br />

214.<br />

29. Katoh K., Misawa K., Kuma K., Miyata T. MAFFT: a<br />

novel method for rapid multiple sequence alignment<br />

based on fast Fourier transform // Nucl. Acids Res.<br />

2002. V. 30. P. 3059–3066.<br />

30. Swofford D.L. PAUP*: Phylogenetic Analysis Using<br />

Parsimony (*and other methods). Version 4.0b10. MA:<br />

Sinauer Assoc. Inc., 2002.<br />

31. Posada D., Crandall K.A. MODELTEST: testing the<br />

model of DNA substitution // Bioinformatics. 1998.<br />

V. 14. № 9. P. 817–818.<br />

32. Zwickl D.J. Genetic algorithm approaches for the phylogenetic<br />

analysis of large biological sequence datasets<br />

under the maximum likelihood criterion: Ph.D. dissertation.<br />

Austin: Univ. Texas, 2006. 115 p.<br />

33. Ronquist F., Huelsenbeck J.P. MRBAYES 3: Bayesian<br />

phylogenetic inference under mixed models // Bioinformatics.<br />

2003. V. 19. № 12. P. 1572–1574.<br />

34. Drummond A.J., Rambaut A. BEAST: Bayesian Evolutionary<br />

Analysis by Sampling Trees // BMC Evol. Biol.<br />

2007. V. 7. № 1. P. 214.<br />

35. Wilson M.V.H., Brinkman D.B., Neuman A.G. Cretaceous<br />

Esocoidei (Teleostei): early radiation of the pikes<br />

ГЕНЕТИКА том 49 № 6 2013

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