Supplementary Table S1
Supplementary Table S1
Supplementary Table S1
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Han et al. TABLE <strong>S1</strong><br />
TABLE <strong>S1</strong>. Transposable element (TE) insertions identified by this study. Pattern refers to the insertion patterns described in Fig. 1.<br />
The pattern identification is provided for simple insertions.<br />
TE # Locus Intron Type Taxa Pattern Notes<br />
1 ALDOB 3 CR1 Smithornis<br />
2 ALDOB 3 SINE Mionectes<br />
3 ALDOB 5 CR1 Trogoniformes<br />
4 ALDOB 5 ERV Gallus<br />
5 CLTC 6 CR1 Turnix<br />
6 CLTC 6 ERV Coturnix<br />
7 CLTC 7 CR1 Bucco, Galbula<br />
8 CLTC 7 CR1 Corythaeola<br />
9 CLTCL1 7 ERV Eurypyga, Rhynochetos<br />
10 CLTCL1 7 CR1 Coliiformes<br />
11 CRYAA 1 CR1 Bucco, Galbula<br />
12 EEF2 5 CR1 Alcedo<br />
13 EEF2 5 CR1 Podiceps<br />
14 EEF2 5 CR1 Coccyzus, Cuculus,<br />
Phaenicophaeus<br />
15 EEF2 5 CR1 Alectura, Megapodius<br />
16 EEF2 5 CR1 Bucco, Galbula<br />
17 EEF2 6 CR1 Acsanthisitta<br />
18 EEF2 7 CR1 Colibri<br />
19 EEF2 7 L3 Hemiprocne d Same site as 20<br />
20 EEF2 7 CR1 Aerodramus, Hemiprocne,<br />
d Same site as 19<br />
Streptoprocne<br />
21 EEF2 8 CR1 Columbiformes<br />
22 EEF2 8 CR1 Coccyzus d Same site as 23<br />
23 EEF2 8 CR1 Coccyzus d Same site as 22<br />
24 EEF2 8 CR1 Arenaria, Jacana, Pedionomus, b Same site as 25<br />
Rostratula, Thinocorus<br />
25 EEF2 8 CR1 Capito, Megalaima, Dryocopus,<br />
Indicator<br />
1<br />
b Same site as 24
Han et al. TABLE <strong>S1</strong><br />
TE # Locus Intron Type Taxa Pattern Notes<br />
26 EEF2 8 CR1 Cuculiformes No sequence data for Phaenicophaeus<br />
27 EEF2 8 CR1 Passeriformes b Same site as 28; No sequence data for<br />
Mionectes, Turdus<br />
28 EEF2 8 CR1 Psitaciiformes b Same site as 27; No sequence data for<br />
Psittacula<br />
29 FGB 5 Polinto Tyto, Phodilus<br />
n<br />
30 FGB 5 CR1 Phoeniculus<br />
31 FGB 7 CR1 Columbiformes<br />
32 FGB 7 CR1 Pedionomus<br />
33 FGB 7 CR1 Psitaciiformes<br />
34 FGB 7 CR1 Eudyptula<br />
35 GH1 2 CR1 Todus<br />
36 GH1 2 CR1 Bucco, Galbula, Dryocopus Conflicts with 50; No sequence data for<br />
Capito, Indicator, Megalaima<br />
37 GH1 2 CR1 Upupa, Phoeniculus<br />
38 GH1 2 CR1 Cuculiformes (except Geococcyx) c Homoplasy; No sequence data for<br />
Centropus; Deletion in Coua<br />
39 GH1 2 CR1 Cuculiformes d Same site as 40; No sequence data for<br />
Centropus; Deletion in Coua<br />
40 GH1 2 CR1 Geococcyx d Same site as 39; No sequence data for<br />
Centropus<br />
41 GH1 2 CR1 Colibri<br />
42 GH1 3 CR1 Eurostopodus<br />
43 GH1 3 CR1 Bucco<br />
44 HMGN2 2 CR1 Streptoprocne<br />
45 HMGN2 3 CR1 Passeriformes Limited taxon sampling, though the major<br />
passerine lineages were represented<br />
46 HMGN2 4 CR1 Aerodramus, Hemiprocne,<br />
Streptoprocne<br />
47 HMGN2 4 CR1 Coccyzus<br />
48 HMGN2 4 CR1 Bucco<br />
2
Han et al. TABLE <strong>S1</strong><br />
TE # Locus Intron Type Taxa Pattern Notes<br />
49 HMGN2 4 CR1 Capito, Dryocopus, Indicator,<br />
Megalaima<br />
50 HMGN2 4 CR1 Piciformes, Coraciiformes (except c Homoplasy<br />
Bucco, Galbula)<br />
51 HMGN2 5 CR1 Brachypteracias<br />
52 IRF2 2 CR1 Geotrygon<br />
53 MB 1 CR1 Phoeniculus<br />
54 MB 1 CR1 Colinus, Gallus, Numida, Rollulus No sequence data for Coturnix<br />
55 MUSK 3 SINE Galbula d Same site as 56<br />
56 MUSK 3 CR1 Galbula d Same site as 55<br />
57 MYC b CR1 Scopus<br />
58 PCBD1 2 CR1 Larus<br />
59 PCBD1 2 CR1 Chalcopsitta<br />
60 PCBD1 3 CR1 Turnix<br />
61 PCBD1 3 CR1 Coccyzus<br />
62 PCBD1 3 CR1 Arenaria, Jacana, Pedionomus,<br />
No sequence data for Thinocorus<br />
Rostratula<br />
63 PCBD1 3 CR1 Megalaima<br />
64 PCBD1 3 CR1 Capito, Megalaima<br />
65 TGFB2 5 CR1 Alcedo<br />
66 TGFB2 5 CR1 Rallus<br />
3
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