maenas (intertidal zone) and Segonzacia mesatlantica - Station ...
maenas (intertidal zone) and Segonzacia mesatlantica - Station ... maenas (intertidal zone) and Segonzacia mesatlantica - Station ...
The Structural Analysis of Large Noncovalent Oxygen Binding Proteins Current Protein and Peptide Science, 2008, Vol. 9, No. 2 169 Fig. (5). Evaluation of the molecular weight and gyration radius during the dissociation process of AmHb. Dissociation of AmHb followed by MALLS during the elution from a gel exclusion column (Superose 6-C). The solid curve represents the refractive index (RI) profile overlaid with the dotted curve which represents the light scattering profil at 90° (LS), versus the retention time. The RI and LS data have been scaled to make the comparison easier. (a) Distribution of the molecular weight values at different incubation times: Mw profiles of AmHb immediately after exposure at pH 7.8 (red crosses), after 2 hours dissociation (black squares) and 24 hours dissociation (blue triangles). The RI and LS profile correspond to a dissociation time of 2 hours. (b) Distribution of the gyration radius values at different incubation times: Rw profiles of AmHb immediately after exposure at pH 7.8 (red crosses), after 2 hours dissociation (black squares) and 24 hours dissociation (blue triangles). characteristic of a less homogenous population. The polydispersity of the peak I HBL indicates that it includes intermediates of dissociation which are truncated HBL AmHb (Fig. 5a). Truncated HBL-Hb (partially dissociated HBL-Hb particles lacking 1/6 to 1/2 of the HBL structure) are also observed on the TEM images of I HBL fraction purified by gel filtration (Fig. 6b). Even if the estimated gyration radius average values (Fig. 5b) are close to the angular variation detection limit of 10 nm, Rg decreases after 2 hours with an important scattering and increase after 24 hours of incubation for I 1 and I 2 . The same samples were analyzed by ESI- MS under non-denaturing conditions and provided the results shown in Fig. (7a,c). ESI-MS spectrum of partially dissociated AmHb under non-denaturing conditions (Fig. 7a) reveals the presence of a subunit of ~224 kDa which should correspond to the 1/12 th subunits (D+L). However, ESI-MS spectrum of entirely dissociated AmHb under denaturing and non-denaturing conditions (Fig. 7c) revealed the presence of a subunit of ~204 kDa which correspond to the dodecamers D. Several simultaneous dissociations of a HBL-Hb structure can be envisioned as proposed for Lumbricus Hb dissociation [111]. However, the dissociation process of AmHb is more complex to interpret. The dissociation leads to the rapid formation of the 1/12 th subunits (D+L) through truncated HBL. Indeed, SEC-MALLS (Fig. 6a), TEM (Fig. 7b) and ESI-MS results (Fig. 7a,b) reveal the presence of a small amount of truncated HBL at the early stage of the dissociation process and the formation of one major peak I D (Fig. 5) interpreted as the 1/12 th subunits (D+L) because of the higher Mw of peak I D (MALLS and ESI-MS results, Fig. 7a,b). All indicate that the dodecamer is still associated with linkers at the beginning of the dissociation. Then, the linkers dissociate from the dodecamer resulting in a decrease of Mw (peak I D , Fig. 7c). The dodecamer does not dissociate into stable trimers and monomers as observed for Lumbricus Hb [111] but into higher Mw units (peaks I 1 and I 2 , Fig. 5a,7a), in low abundance and transitory. The denaturation of these subunits is evident from the variation of the gyration radius Rg (Fig. 5b). Rg increases while the molecular mass decreases after 24 hours dissociation. These variations 90
170 Current Protein and Peptide Science, 2008, Vol. 9, No. 2 Bruneaux et al. Fig. (6). Dissociation/reassociation properties of AmHb followed by SEC-MALLS and electron micrographs. (a) After dissociation of AmHb (red), some rearrangements are observed when the sample is returned to neutral pH (blue). This rearrangment is only observed in the presence of partially dissociated HBL-Hbs and the 1/12th subunits (D+L) and led to a recovery of the structure of the 1/12th subunits at different degree of polymerisation, and up to a completely reassociated HBL-Hb. (b) Electron micrographs of AmHb, negatively stained showing self-association properties of Arenicola Hb. (Native) View of native AmHb. (Dissociated) View of truncated HBL and dodecamers of AmHb isolated by gel filtration after dissociation. (Reassociated) View of reassociated AmHb isolated by gel filtration. The yellow and pink arrows indicate the top and side view of the AmHb HBL-Hb, respectively. of Rg are characteristic of an extended unfolded conformation during the dissociation process. The decrease of Rg after 2 hours of dissociation is explained by the formation of smaller subunits with smaller radius. The important scatter is due to the presence of a mix of small structured subunits and small destructed subunits which have a higher gyration radius. After 24 hours of dissociation most of these dissociated subunits are denaturated so the scattering is less important. The extent of reassociation of AmHb was investigated by MALLS after dissociation at alkaline pH. Since scattering intensity is strongly dependent on particle radius, a small amount of large particles in the sample would give a large response with the light scattering detector, although their amount, as measured by the RI response, is low. These interesting properties allowed us to observe a reassembly of AmHb which was not so easily observed using gel filtration only (Fig. 6). The reassociation is limited, as revealed by the RI profiles of peak I HBL after reassociation and the proportion of reassociated HBL-Hb (Fig. 8). The observation of the reassociation is characterized by the differences of the LS signals for the I HBL peak before and after the reassociation (Fig. 8). The reassociation is not observed after 1 hour of dissociation at alkaline pH (Fig. 8c) and is less important as pH increases (Fig. 8b) and coincides with the absence of truncated HBL-Hbs (retention time between 20 and 25 min) as revealed by MALLS profile (Fig. 8c). The reassociation is confirmed by the TEM images of I HBL isolated by gel filtration after reassociation process (Fig. 6b). We can distinguish truncated HBL-Hbs in a more structured conformation than before reassociation (Fig. 6a) and structured HBL-Hb similar to native Arenicola HBL-Hb (Fig. 6b). 91
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170 Current Protein <strong>and</strong> Peptide Science, 2008, Vol. 9, No. 2 Bruneaux et al.<br />
Fig. (6). Dissociation/reassociation properties of AmHb followed by SEC-MALLS <strong>and</strong> electron micrographs.<br />
(a) After dissociation of AmHb (red), some rearrangements are observed when the sample is returned to neutral pH (blue). This rearrangment<br />
is only observed in the presence of partially dissociated HBL-Hbs <strong>and</strong> the 1/12th subunits (D+L) <strong>and</strong> led to a recovery of the structure of the<br />
1/12th subunits at different degree of polymerisation, <strong>and</strong> up to a completely reassociated HBL-Hb. (b) Electron micrographs of AmHb, negatively<br />
stained showing self-association properties of Arenicola Hb. (Native) View of native AmHb. (Dissociated) View of truncated HBL <strong>and</strong><br />
dodecamers of AmHb isolated by gel filtration after dissociation. (Reassociated) View of reassociated AmHb isolated by gel filtration. The<br />
yellow <strong>and</strong> pink arrows indicate the top <strong>and</strong> side view of the AmHb HBL-Hb, respectively.<br />
of Rg are characteristic of an extended unfolded conformation<br />
during the dissociation process. The decrease of Rg after<br />
2 hours of dissociation is explained by the formation of<br />
smaller subunits with smaller radius. The important scatter is<br />
due to the presence of a mix of small structured subunits <strong>and</strong><br />
small destructed subunits which have a higher gyration radius.<br />
After 24 hours of dissociation most of these dissociated<br />
subunits are denaturated so the scattering is less important.<br />
The extent of reassociation of AmHb was investigated by<br />
MALLS after dissociation at alkaline pH. Since scattering<br />
intensity is strongly dependent on particle radius, a small<br />
amount of large particles in the sample would give a large<br />
response with the light scattering detector, although their<br />
amount, as measured by the RI response, is low. These interesting<br />
properties allowed us to observe a reassembly of<br />
AmHb which was not so easily observed using gel filtration<br />
only (Fig. 6). The reassociation is limited, as revealed by the<br />
RI profiles of peak I HBL after reassociation <strong>and</strong> the proportion<br />
of reassociated HBL-Hb (Fig. 8). The observation of the<br />
reassociation is characterized by the differences of the LS<br />
signals for the I HBL peak before <strong>and</strong> after the reassociation<br />
(Fig. 8). The reassociation is not observed after 1 hour of<br />
dissociation at alkaline pH (Fig. 8c) <strong>and</strong> is less important as<br />
pH increases (Fig. 8b) <strong>and</strong> coincides with the absence of<br />
truncated HBL-Hbs (retention time between 20 <strong>and</strong> 25 min)<br />
as revealed by MALLS profile (Fig. 8c). The reassociation is<br />
confirmed by the TEM images of I HBL isolated by gel filtration<br />
after reassociation process (Fig. 6b). We can distinguish<br />
truncated HBL-Hbs in a more structured conformation than<br />
before reassociation (Fig. 6a) <strong>and</strong> structured HBL-Hb similar<br />
to native Arenicola HBL-Hb (Fig. 6b).<br />
91