Anotación funcional - Bioinformatics and Genomics Department at ...
Anotación funcional - Bioinformatics and Genomics Department at ...
Anotación funcional - Bioinformatics and Genomics Department at ...
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Mapeo detallado<br />
Blast2GO ast GO sigue sgue3 3 diferentes d e e tes caminos ca os durante du a te el e mapeo apeo para pa a obtener obte e<br />
la máxima información GO posible para los hits:<br />
1. BlastResult Accessions BlastResult.accs are used to retrieve GeneNames (Symbols) y making g<br />
use of two mapping ncbi.gene2accession.protein_accession<br />
files provided by NCBI (gene_info, gene2accession).<br />
Identified GeneNames are ncbi.gene_info.symbol(tax_id)<br />
searched in the species specific entries of the<br />
GeneProduct Table of the GO‐D<strong>at</strong>abase.<br />
go.gene_product.symbol(ncbi_taxa_id)<br />
2. BlastResult GI identifier are used to retrieve UniPort Ids making use of a<br />
BlastResult.gis<br />
mapping file from PIR (Non‐redundant REFerence protein d<strong>at</strong>abase)<br />
pir.nref.uniprot.id<br />
including PSD, UniProt, Swiss‐Prot, TrEMBL, RefSeq, GenPept <strong>and</strong> PDB.<br />
go.dbxref.xref_key<br />
g _ y<br />
Identified Uniprot Ids are searched in the DBXRef Table of the GO GO‐D<strong>at</strong>abase D<strong>at</strong>abase<br />
3. BlastResult Accessions are searched direcly in the DBXRef Table of the GO‐<br />
D<strong>at</strong>abase.<br />
D<strong>at</strong>abase. BlastResult BlastResult.accs accs<br />
go.dbxref.xref_key<br />
Curso Bioinformática, 19 Diciembre 2007, Universida de Alicante
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