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AAPI’S NUTRITION GUIDE TO OPTIMAL HEALTH: USING PRINCIPLES OF FUNCTIONAL MEDICINE AND NUTRITIONAL GENOMICS<br />

adaptive immune system respectively, balance of<br />

Th1/Th2 cytokines produced by the mucosa-associated<br />

lymphoreticular system (MALT) <strong>and</strong> the GALT plays a<br />

role in the stabilization of mucosal surfaces in the gut<br />

(34). These mucosal surfaces have multiple tasks<br />

that include absorption, macromolecule transfer <strong>and</strong><br />

intestinal barrier <strong>and</strong> secretory functions. Large mucosal<br />

surfaces, such as the 300 square meters found in the<br />

human intestinal tract, are continuously exposed to<br />

millions of potentially harmful antigens from the<br />

environment, food <strong>and</strong> intestinal microbes. The mucosal<br />

surfaces possess a unique immune system that tightly<br />

controls the balance between responsiveness <strong>and</strong> nonresponsiveness.<br />

Loss of this immunological recognition<br />

of ‚friend vs foe‛ in the gut can result in activation of<br />

the inflammatory process (29). There is growing<br />

evidence that chronic inflammatory disorders in the<br />

mucosa, such as IBD, are due to the dysregulation of<br />

the mucosal immune system leading to a Th1<br />

dominant inflammatory reaction <strong>and</strong> impairment of the<br />

barrier function of the gut. (34)<br />

Table 2. Susceptibility genes associated with IBD<br />

Name Of The Gene Gene Abbreviation Gene Variants<br />

(discussed in this<br />

Caspase-activated<br />

recruitment domain<br />

15/nucleotide<br />

oligomerization domain<br />

2<br />

Autophagy-related 16like<br />

1<br />

Human beta defensins<br />

B2, B3 <strong>and</strong> B4<br />

Major histocompatibility<br />

complex<br />

review)<br />

CARD15/NOD2 � Arg702Trp<br />

� Gly908Arg<br />

� 1007finsC or<br />

c.3020insC<br />

89<br />

2012<br />

Genes/Gene Variants Associated With IBD – What Do<br />

We Know?<br />

Knowing the genes <strong>and</strong> gene variants associated with<br />

IBD can be useful for the practitioner once it is<br />

understood what genes are involved <strong>and</strong> how their<br />

variations are related to underlying mechanisms of IBD<br />

pathogenesis. Furthermore, evidence based nutrition<br />

intervention can be used to modulate genetic<br />

expression which can ultimately affect phenotypic<br />

outcome of the individual.<br />

While IBD appears to be of polygenic etiology,<br />

research strongly supports the assumption that<br />

susceptibility to IBD, especially Crohn’s disease, is<br />

inherited. It also indicates that IBD is not inherited as<br />

a Mendelian trait, but rather has a complex genetic<br />

basis with many contributing genes <strong>and</strong> at least nine<br />

susceptibility loci identified (34, 35). (See Fig 1).<br />

Table 2 is a classification of the susceptibility genes,<br />

their variants <strong>and</strong> areas genes affect (12,13,35,37-<br />

42).<br />

Areas Genes Affect<br />

Affects bacterial<br />

recognition of the<br />

intestinal wall<br />

ATG16L1 Affects bacterial<br />

recognition of the<br />

HBD-2, HBD-3 <strong>and</strong><br />

HBD-4<br />

intestinal wall<br />

Affects bacterial<br />

recognition of the<br />

intestinal wall<br />

MHC Affects immune<br />

response<br />

Interleukin-23 receptor IL23R Affects immune<br />

response<br />

Toll-like receptors TLRs Affects immune<br />

response<br />

Sodium dependent SLC22A4/SLC22A5 � SLC22A4 Affects mucosal

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