Role of Intestinal Microbiota in Ulcerative Colitis

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Methodology part Paper 2 Fecal lactobacilli and bifidobacteria from ulcerative colitis patients display reduced ability to colonize mucus <strong>in</strong> the M‐SHIME. Paper <strong>in</strong> preparation (Page numbers are relative to paper) 69 Paper 2
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Role of Intestinal Microbiota in Ul
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Role of Intestinal Microbiota in Ul
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Preface Preface This thesis present
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Summary Summary The microbiota of t
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Dansk sammendrag Dansk sammendrag M
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Introduction and objectives Introdu
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List of Manuscripts Not included in
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List of contents List of Centents P
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List of Centents Methodology append
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1. The intestinal environment Theor
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Theoretical part 5 1. The intestina
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2. The colonic environment Theoreti
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Theoretical part 9 2. The colonic e
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Table 1: The presence of glycoside
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Theoretical part Figure 3: The colo
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3. Inflammatory Bowel disease Theor
Page 35 and 36: Theoretical part 17 3. Inflammatory
Page 37 and 38: Theoretical part 19 4. Modulation o
Page 43 and 44: Table 4: Clinical trials on the pre
Page 45 and 46: Theoretical part 5. Production of p
Page 51: Methodology part
Page 54 and 55: Methodology part 6. Methodology, co
Page 60 and 61: Introduction Methodology part 42 Pa
Page 62 and 63: Abstract Background Detailed knowle
Page 64 and 65: depending the level of disease acti
Page 66 and 67: in 1 x TAE at 60 °C for 16 h at 36
Page 68 and 69: Statistics PCA were generated by SA
Page 70 and 71: The PCA of the Gram‐positive bact
Page 72 and 73: layer of UC patients and found that
Page 74 and 75: Acknowledgements The authors thank
Page 76 and 77: Table 2 ‐ 16S rRNA gene and 16S
Page 78 and 79: 1. Firmicutes phylum 2. Bacteroidet
Page 80 and 81: Supplementary Figure S1. Dice clust
Page 82 and 83: Reference List 1. Ahmed S, Macfarla
Page 84 and 85: 32. Matsuki T, Watanabe K, Fujimoto
Page 88 and 89: Introduction Methodology part The a
Page 90 and 91: Abstract Mucus is secreted by goble
Page 92 and 93: [60], colonic tissue [46] or cell l
Page 94 and 95: espectively [61]. The system was fl
Page 96 and 97: samples for all primer sets. Analys
Page 98 and 99: luminal samples (Table 3). Relative
Page 100 and 101: The composition of the species of l
Page 102 and 103: Acknowledgements The authors thank
Page 104 and 105: Table 1 continues Eubacterium recta
Page 106 and 107: Table 3 ‐ Relative fold change of
Page 108 and 109: Figure 2. Dice cluster analysis of
Page 110 and 111: Reference List 1. Ahmed S, Macfarla
Page 112 and 113: 31. Laparra J, Sanz Y. (2009) Compa
Page 114 and 115: 62. Van den Abbeele P, Van de Wiele
Page 116 and 117: Methodology part Paper 3 Introducti
Page 118 and 119: VOL. 77, 2011 IN VITRO FERMENTATION
Page 127 and 128: Methodology part Paper 4 Feruloylat
Page 129 and 130: Received: March 11, 2011 Revised: M
Page 131 and 132: Journal of Agricultural and Food Ch
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Journal of Agricultural and Food Ch
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Methodology part Introduction The a
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874 Appl Microbiol Biotechnol (2011
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Methodology part Introduction The a
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1040 J. Holck et al. / Process Bioc
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Methodology part Methodology append
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Appendix 1 Methodology part Quantif
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Appendix 2 Methodology part Quantif
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Methodology part Appendix 3 hoc tes
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Discussion and conclusion
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Discussion and conclusion 160 7. Di
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8. Conclusion Discussion and conclu
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References Casellas,F., Borruel,N.,
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References Ghadimi,D., de Vrese,M.,
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References Jacobs,D.M., Gaudier,E.,
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References Loubinoux,J., Valente,F.
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References Olano‐Martin,E., Mount
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References Saunders,N.A. (2009). An
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References Ventura,M., Turroni,F.,
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Role of Intestinal Microbiota in Ulcerative Colitis

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