Role of Intestinal Microbiota in Ulcerative Colitis

Role of Intestinal Microbiota in Ulcerative Colitis Role of Intestinal Microbiota in Ulcerative Colitis

05.02.2013 Views

References Loubinoux,J., Valente,F.M.A., Pereira,I.A.C., Costa,A., Grimont,P.A.D., and Le Faou,A.E. (2002). Reclassification of the only species of the genus Desulfomonas, Desuffomonas pigra, as Desulfovibrio piger comb. nov. International Journal of Systematic and Evolutionary Microbiology. 52:1305‐1308. Macfarlane,G.T., Gibson,G.R., and Cummings,J.H. (1992). Comparison of Fermentation Reactions in Different Regions of the Human Colon. Journal of Applied Bacteriology. 72:57‐64. Macfarlane,S. (2008). Microbial biofilm communities in the gastrointestinal tract. Journal of Clinical Gastroenterology. 42:S142‐S143. Macfarlane,S., Blackett,K.E., and Macfarlane,G.T. (2010). Synthesis and Utilization of Exopolysaccharides and Prebioitcs. In: Bifidobacteria; Genomics and Molecular Aspects. Ed. B.Mayo and D.van Sinderen. Cork: Caister Academic Press. 175‐193. Macfarlane,S., Furrie,E., Cummings,J.H., and Macfarlane,G.T. (2004). Chemotaxonomic analysis of bacterial populations colonizing the rectal mucosa in patients with ulcerative colitis. Clinical Infectious Diseases. 38:1690‐1699. Macfarlane,S. and Macfarlane,G.T. (2003). Regulation of short‐chain fatty acid production. Proceedings of the Nutrition Society. 62:67‐72. Macfarlane,S., Woodmansey,E.J., and Macfarlane,G.T. (2005). Colonization of mucin by human intestinal bacteria and establishment of biofilm communities in a two‐stage continuous culture system. Applied and Environmental Microbiology. 71:7483‐7492. Machiels,B.M., Ruers,T., Lindhout,M., Hardy,K., Hlavaty,T., Bang,D.D., Somers,V.A.M.C., Baeten,C., von Meyenfeldt,M., and Thunnissen,F.B.J.M. (2000). New protocol for DNA extraction of stool. Biotechniques. 28:286‐290. Macpherson,A.J., Geuking,M.B., and Mccoy,K.D. (2005). Immune responses that adapt the intestinal mucosa to commensal intestinal bacteria. Immunology. 115:153‐162. Mandalari,G., Palop,C., Tuohy,K., Gibson,G., Bennett,R., Waldron,K., Bisignano,G., Narbad,A., and Faulds,C. (2007). In vitro evaluation of the prebiotic activity of a pectic oligosaccharide‐rich extract enzymatically derived from bergamot peel. Applied Microbiology and Biotechnology. 73:1173‐1179. Manderson,K., Pinart,M., Tuohy,K.M., Grace,W.E., Hotchkiss,A.T., Widmer,W., Yadhav,M.P., Gibson,G.R., and Rastall,R.A. (2005). In vitro determination of prebiotic properties of oligosaccharides derived from an orange juice manufacturing by‐product stream. Applied and Environmental Microbiology. 71:8383‐8389. Margolles,A. and de los Reyes‐Gavilan,C. (2003). Purification and functional characterization of a novel alpha‐L‐arabinofuranosidase from Bifidobacterium longum B667. Applied and Environmental Microbiology. 69:5096‐5103. Marquet,P., Duncan,S.H., Chassard,C., Bernalier‐Donadille,A., and Flint,H.J. (2009). Lactate has the potential to promote hydrogen sulphide formation in the human colon. Fems Microbiology Letters. 299:128‐134. Marteau,P., Pochart,P., Dore,J., Bera‐Maillet,C., Bernalier,A., and Corthier,G. (2001). Comparative study of bacterial groups within the human cecal and fecal microbiota. Applied and Environmental Microbiology. 67:4939‐4942. Masco,L., Vanhoutte,T., Temmerman,R., Swings,J., and Huys,G. (2007). Evaluation of real‐time PCR targeting the 16S rRNA and recA genes for the enumeration of bifidobacteria in probiotic products. International Journal of Food Microbiology. 113:351‐357. Massari,P., Henneke,P., Ho,Y., Latz,E., Golenbock,D.T., and Wetzler,L.M. (2002). Cutting edge: Immune stimulation by neisserial porins is toll‐like receptor 2 and MyD88 dependent. Journal of Immunology. 168:1533‐1537. Matsuki,T., Watanabe,K., Fujimoto,J., Takada,T., and Tanaka,R. (2004). Use of 16S rRNA gene‐targeted group‐specific primers for real‐time PCR analysis of predominant bacteria in human feces. Applied and Environmental Microbiology. 70:7220‐7228. 174

References Matsuki,T., Watanabe,K., Tanaka,R., and Oyaizu,H. (1998). Rapid identification of human intestinal bifidobacteria by 16S rRNA‐targeted species‐ and group‐specific primers. Fems Microbiology Letters. 167:113‐121. Mayer,F. and Hillebrandt,J.O. (1997). Potato pulp: microbiological characterization, physical modification, and application of this agricultural waste product. Applied Microbiology and Biotechnology. 48:435‐ 440. McGuckin,M.A., Linden,S.K., Sutton,P., and Florin,T.H. (2011). Mucin dynamics and enteric pathogens. Nature Reviews Microbiology. 9:265‐278. Means,T.K., Wang,S.Y., Lien,E., Yoshimura,A., Golenbock,D.T., and Fenton,M.J. (1999). Human toll‐like receptors mediate cellular activation by Mycobacterium tuberculosis. Journal of Immunology. 163:3920‐3927. Melmed,G., Thomas,L.S., Lee,N., Tesfay,S.Y., Lukasek,K., Michelsen,K.S., Zhou,Y.H., Hu,B., Arditi,M., and Abreu,M.T. (2003). Human intestinal epithelial cells are broadly unresponsive to toll‐like receptor 2‐ dependent bacterial ligands: Implications for host‐microbial interactions in the gut. Journal of Immunology. 170:1406‐1415. Metchnikoff,E. (1908). The Proloning of Life; Optimistic Studies. New York: Putnam. Millard,A.L., Mertes,P.M., Ittelet,D., Villard,F., Jeannesson,P., and Bernard,J. (2002). Butyrate affects differentiation, maturation and function of human monocyte‐derived dendritic cells and macrophages. Clinical and Experimental Immunology. 130:245‐255. Molly,K., Woestyne,M.V., and Verstraete,W. (1993). Development of A 5‐Step Multichamber Reactor As A Simulation of the Human Intestinal Microbial Ecosystem. Applied Microbiology and Biotechnology. 39:254‐258. Moncada,D.M., Kammanadiminti,S.J., and Chadee,K. (2003). Mucin and Toll‐like receptors in host defense against intestinal parasites. Trends in Parasitology. 19:305‐311. Monteiro,L., Bonnemaison,D., Vekris,A., Petry,K.G., Bonnet,J., Vidal,R., Cabrita,J., and Megraud,F. (1997). Complex polysaccharides as PCR inhibitors in feces: Helicobacter pylori model. Journal of Clinical Microbiology. 35:995‐998. Morrison,D.J., Mackay,W.G., Edwards,C.A., Preston,T., Dodson,B., and Weaver,L.T. (2006). Butyrate production from oligofructose fermentation by the human faecal flora: what is the contribution of extracellular acetate and lactate? British Journal of Nutrition. 96:570‐577. Mueller,S. et al. (2006). Differences in fecal microbiota in different European study populations in relation to age, gender, and country: A cross‐sectional study. Applied and Environmental Microbiology. 72:1027‐1033. Mutter,M., Colquhoun,I.J., Schols,H.A., Beldman,G., and Voragen,G.J. (1996). Rhamnogalacturonase B from aspergillus aculeatus is a rhamnogalacturonan alpha‐L‐rhamnopyranosyl‐(1‐>4)‐alpha‐D‐ galactopyranosyluronide lyase. Plant Physiology. 110:73‐77. Myers,D. Cross Section of Colon ‐ Overview. http://z.about.com/d/coloncancer/1/0/Y/3/Overview.png . 7‐ 2‐2007. Mylonaki,M., Rayment,N.B., Rampton,D.S., Hudspith,B.N., and Brostoff,J. (2005). Molecular characterization of rectal mucosa‐associated bacterial flora in inflammatory bowel disease. Inflammatory Bowel Diseases. 11:481‐487. Nishina,P.M. and Freedland,R.A. (1990). The Effects of Dietary Fiber Feeding on Cholesterol‐Metabolism in Rats. Journal of Nutrition. 120:800‐805. Nuding,S., Zabel,L.T., Enders,C., Porter,E., Fellermann,K., Wehkamp,J., Mueller,H.A.G., and Stange,E.F. (2009). Antibacterial activity of human defensins on anaerobic intestinal bacterial species: a major role of HBD‐3. Microbes and Infection. 11:384‐393. Øbro,J., Harholt,J., Scheller,H.V., and Orfila,C. (2004). Rhamnogalacturonan I in Solanum tuberosum tubers contains complex arabinogalactan structures. Phytochemistry. 65:1429‐1438. Olano‐Martin,E., Gibson,G.R., and Rastall,R.A. (2002). Comparison of the in vitro bifidogenic properties of pectins and pectic‐oligosaccharides. Journal of Applied Microbiology. 93:505‐511. 175

References<br />

Matsuki,T., Watanabe,K., Tanaka,R., and Oyaizu,H. (1998). Rapid identification <strong>of</strong> human <strong>in</strong>test<strong>in</strong>al<br />

bifidobacteria by 16S rRNA‐targeted species‐ and group‐specific primers. Fems Microbiology Letters.<br />

167:113‐121.<br />

Mayer,F. and Hillebrandt,J.O. (1997). Potato pulp: microbiological characterization, physical modification,<br />

and application <strong>of</strong> this agricultural waste product. Applied Microbiology and Biotechnology. 48:435‐<br />

440.<br />

McGuck<strong>in</strong>,M.A., L<strong>in</strong>den,S.K., Sutton,P., and Flor<strong>in</strong>,T.H. (2011). Muc<strong>in</strong> dynamics and enteric pathogens.<br />

Nature Reviews Microbiology. 9:265‐278.<br />

Means,T.K., Wang,S.Y., Lien,E., Yoshimura,A., Golenbock,D.T., and Fenton,M.J. (1999). Human toll‐like<br />

receptors mediate cellular activation by Mycobacterium tuberculosis. Journal <strong>of</strong> Immunology.<br />

163:3920‐3927.<br />

Melmed,G., Thomas,L.S., Lee,N., Tesfay,S.Y., Lukasek,K., Michelsen,K.S., Zhou,Y.H., Hu,B., Arditi,M., and<br />

Abreu,M.T. (2003). Human <strong>in</strong>test<strong>in</strong>al epithelial cells are broadly unresponsive to toll‐like receptor 2‐<br />

dependent bacterial ligands: Implications for host‐microbial <strong>in</strong>teractions <strong>in</strong> the gut. Journal <strong>of</strong><br />

Immunology. 170:1406‐1415.<br />

Metchnik<strong>of</strong>f,E. (1908). The Prolon<strong>in</strong>g <strong>of</strong> Life; Optimistic Studies. New York: Putnam.<br />

Millard,A.L., Mertes,P.M., Ittelet,D., Villard,F., Jeannesson,P., and Bernard,J. (2002). Butyrate affects<br />

differentiation, maturation and function <strong>of</strong> human monocyte‐derived dendritic cells and<br />

macrophages. Cl<strong>in</strong>ical and Experimental Immunology. 130:245‐255.<br />

Molly,K., Woestyne,M.V., and Verstraete,W. (1993). Development <strong>of</strong> A 5‐Step Multichamber Reactor As A<br />

Simulation <strong>of</strong> the Human <strong>Intest<strong>in</strong>al</strong> Microbial Ecosystem. Applied Microbiology and Biotechnology.<br />

39:254‐258.<br />

Moncada,D.M., Kammanadim<strong>in</strong>ti,S.J., and Chadee,K. (2003). Muc<strong>in</strong> and Toll‐like receptors <strong>in</strong> host defense<br />

aga<strong>in</strong>st <strong>in</strong>test<strong>in</strong>al parasites. Trends <strong>in</strong> Parasitology. 19:305‐311.<br />

Monteiro,L., Bonnemaison,D., Vekris,A., Petry,K.G., Bonnet,J., Vidal,R., Cabrita,J., and Megraud,F. (1997).<br />

Complex polysaccharides as PCR <strong>in</strong>hibitors <strong>in</strong> feces: Helicobacter pylori model. Journal <strong>of</strong> Cl<strong>in</strong>ical<br />

Microbiology. 35:995‐998.<br />

Morrison,D.J., Mackay,W.G., Edwards,C.A., Preston,T., Dodson,B., and Weaver,L.T. (2006). Butyrate<br />

production from olig<strong>of</strong>ructose fermentation by the human faecal flora: what is the contribution <strong>of</strong><br />

extracellular acetate and lactate? British Journal <strong>of</strong> Nutrition. 96:570‐577.<br />

Mueller,S. et al. (2006). Differences <strong>in</strong> fecal microbiota <strong>in</strong> different European study populations <strong>in</strong> relation<br />

to age, gender, and country: A cross‐sectional study. Applied and Environmental Microbiology.<br />

72:1027‐1033.<br />

Mutter,M., Colquhoun,I.J., Schols,H.A., Beldman,G., and Voragen,G.J. (1996). Rhamnogalacturonase B<br />

from aspergillus aculeatus is a rhamnogalacturonan alpha‐L‐rhamnopyranosyl‐(1‐>4)‐alpha‐D‐<br />

galactopyranosyluronide lyase. Plant Physiology. 110:73‐77.<br />

Myers,D. Cross Section <strong>of</strong> Colon ‐ Overview. http://z.about.com/d/coloncancer/1/0/Y/3/Overview.png . 7‐<br />

2‐2007.<br />

Mylonaki,M., Rayment,N.B., Rampton,D.S., Hudspith,B.N., and Brost<strong>of</strong>f,J. (2005). Molecular<br />

characterization <strong>of</strong> rectal mucosa‐associated bacterial flora <strong>in</strong> <strong>in</strong>flammatory bowel disease.<br />

Inflammatory Bowel Diseases. 11:481‐487.<br />

Nish<strong>in</strong>a,P.M. and Freedland,R.A. (1990). The Effects <strong>of</strong> Dietary Fiber Feed<strong>in</strong>g on Cholesterol‐Metabolism <strong>in</strong><br />

Rats. Journal <strong>of</strong> Nutrition. 120:800‐805.<br />

Nud<strong>in</strong>g,S., Zabel,L.T., Enders,C., Porter,E., Fellermann,K., Wehkamp,J., Mueller,H.A.G., and Stange,E.F.<br />

(2009). Antibacterial activity <strong>of</strong> human defens<strong>in</strong>s on anaerobic <strong>in</strong>test<strong>in</strong>al bacterial species: a major<br />

role <strong>of</strong> HBD‐3. Microbes and Infection. 11:384‐393.<br />

Øbro,J., Harholt,J., Scheller,H.V., and Orfila,C. (2004). Rhamnogalacturonan I <strong>in</strong> Solanum tuberosum tubers<br />

conta<strong>in</strong>s complex arab<strong>in</strong>ogalactan structures. Phytochemistry. 65:1429‐1438.<br />

Olano‐Mart<strong>in</strong>,E., Gibson,G.R., and Rastall,R.A. (2002). Comparison <strong>of</strong> the <strong>in</strong> vitro bifidogenic properties <strong>of</strong><br />

pect<strong>in</strong>s and pectic‐oligosaccharides. Journal <strong>of</strong> Applied Microbiology. 93:505‐511.<br />

175

Hooray! Your file is uploaded and ready to be published.

Saved successfully!

Ooh no, something went wrong!