Role of Intestinal Microbiota in Ulcerative Colitis

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884 Appl Microbiol Biotechnol (2011) 90:873–884 Rycroft CE, Jones MR, Gibson GR, Rastall RA (2001) A comparative in vitro evaluation of the fermentation properties of prebiotic oligosaccharides. J Appl Microbiol 91:878–887 Sanz ML, Gibson GR, Rastall RA (2005) Influence of disaccharide structure on prebiotic selectivity in vitro. J Agric Food Chem 53:5192–5199 Sokol H, Seksik P, Furet JP, Firmesse O, Nion-Larmurier L, Beaugerie L, Cosnes J, Corthier G, Marteau P, Dore J (2009) Low counts of Faecalibacterium prausnitzii in colitis microbiota. Inflamm Bowel Dis 15:1183–1189 Stratton J, Chiruvolu V, Meagher M (1998) High cell-density fermentation. In: Pichia protocols, 103rd edn. Humana Press, Totowa, NJ, pp 107–120 Thomassen LV, Meyer AS (2010) Statistically designed optimisation of enzyme catalysed starch removal from potato pulp. Enzyme Microb Technol 46:297–303 Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444:1027– 1031 Van den Broek LAM, denAantrekker ED, Voragen AGJ, Beldman G, Vincken JP (1997) Pectin lyase is a key enzyme in the maceration of potato tuber. J Sci Food Agric 75:167–172 Van Laere KMJ, Hartemink R, Bosveld M, Schols HA, Voragen AGJ (2000) Fermentation of plant cell wall derived polysaccharides and their corresponding oligosaccharides by intestinal bacteria. J Agric Food Chem 48:1644–1652 Walter J, Tannock GW, Tilsala-Timisjarvi A, Rodtong S, Loach DM, Munro K, Alatossava T (2000) Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species-specific PCR primers. Appl Environ Microbiol 66:297–303
Methodology part Paper 6 Tailored enzymatic production of oligosaccharides from sugar beet pectin and Paper 6 evidence of differential effects of a single DP chain length difference human fecal microbiota composition after in vitro fermentation. Published in Process Biochemistry (Page numbers are relative to paper) 135
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Role of Intestinal Microbiota in Ul
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Role of Intestinal Microbiota in Ul
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Preface Preface This thesis present
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Summary Summary The microbiota of t
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Dansk sammendrag Dansk sammendrag M
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Introduction and objectives Introdu
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List of Manuscripts Not included in
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List of contents List of Centents P
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List of Centents Methodology append
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1. The intestinal environment Theor
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Theoretical part 5 1. The intestina
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2. The colonic environment Theoreti
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Theoretical part 9 2. The colonic e
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Table 1: The presence of glycoside
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Theoretical part Figure 3: The colo
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3. Inflammatory Bowel disease Theor
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Theoretical part 17 3. Inflammatory
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Theoretical part 19 4. Modulation o
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Table 4: Clinical trials on the pre
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Theoretical part 5. Production of p
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Methodology part
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Methodology part 6. Methodology, co
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Introduction Methodology part 42 Pa
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Abstract Background Detailed knowle
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depending the level of disease acti
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in 1 x TAE at 60 °C for 16 h at 36
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Statistics PCA were generated by SA
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The PCA of the Gram‐positive bact
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layer of UC patients and found that
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Acknowledgements The authors thank
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Table 2 ‐ 16S rRNA gene and 16S
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1. Firmicutes phylum 2. Bacteroidet
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Supplementary Figure S1. Dice clust
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Reference List 1. Ahmed S, Macfarla
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32. Matsuki T, Watanabe K, Fujimoto
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Methodology part Paper 2 Fecal lact
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Fecal lactobacilli and bifidobacter
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Introduction The mucus layer lining
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efore enrolment and there was no si
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(Bio‐Rad Labs, Hercules, Californ
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Microbial community analysis using
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difference from the luminal microbi
Page 101 and 102: that C. coccoides group and C. lept
Page 103 and 104: Table 1 ‐ 16S rRNA gene of phylum
Page 105 and 106: Table 2 ‐ Preference of bacterial
Page 107 and 108: Figure 1. A) Schematic overview of
Page 109 and 110: A. B. Figure 3. Principal component
Page 111 and 112: 15. Fooks LJ, Gibson GR. (2002) In
Page 113 and 114: 47. Ouwehand AC, Suomalainen T, Tol
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Page 117 and 118: APPLIED AND ENVIRONMENTAL MICROBIOL
Page 119 and 120: 8338 VIGSNÆS ET AL. APPL. ENVIRON.
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Page 128 and 129: Methodology part Introduction The a
Page 130 and 131: Journal of Agricultural and Food Ch
Page 139 and 140: Methodology part Paper 5 Paper 5 Ma
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Page 157 and 158: Table 1 List of enzymes. Enzyme Sou
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Page 161 and 162: Intensity 50 0 C1 175.05 J. Holck e
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Page 170 and 171: Methodology part 152 Appendix 1 hor
Page 172 and 173: Appendix 3 Methodology part Appendi
Page 174 and 175: Methodology part 156 Appendix 3
Page 177 and 178: 7. Discussion and perspectives Disc
Page 179 and 180: Discussion and conclusion 161 7. Di
Page 185 and 186: References References Abreu,M.T., V
Page 187 and 188: References Derrien,M., Vaughan,E.E.
Page 189 and 190: References Haarman,M. and Knol,J. (
Page 191 and 192: References Lantz,P.G., Matsson,M.,
Page 193 and 194: References Matsuki,T., Watanabe,K.,
Page 195 and 196: References Pullan,R.D., Thomas,G.A.
Page 197 and 198: References Tannock,G.W. (2010). Ana
Page 200: National Food Institute Technical U
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Role of Intestinal Microbiota in Ulcerative Colitis

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