Role of Intestinal Microbiota in Ulcerative Colitis

Role of Intestinal Microbiota in Ulcerative Colitis Role of Intestinal Microbiota in Ulcerative Colitis

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List of Manuscripts Not included in this thesis Bergström, A., Licht, T.R., Wilcks, A., Grønlund, H., Andersen, J.B., Vigsnæs, L.K., and Bahl, M. The Gut Low Density Array ‘GULDA’ – A validated approach to rapid quantification of the key bacterial taxa present in intestinal samples. (2012) Paper in preparation. Vigsnæs, L.K., Nakai, H., Hemmingsen, L., Lahtinen, S., Rasmussen, L.E., Hachem, M.A., Meyer, A.S, Licht , T.R., Svensson, B. Selective in vitro growth of individual human gut bacteria on potential prebiotic oligosaccharides produced by chemoenzymatic synthesis. (2012) Paper in preparation. Vermeiren, J., Van den Abbeele, P., Laukens, D., Vigsnæs, L.K., Vos, M.D., Boon, N., and Van de Wiele, T. (2011) Decreased colonization of Clostridium cluster XIVa in an in vitro dynamic gut model during incubation of the fecal microbiota from ulcerative colitis patients. (2011) Submitted to FEMS Microbiology Ecology. DOI:10.1111/j.1574‐6941.2011.01252.x XII

Abbreviations Abbreviations AG Arabinogalactans AOS Arabino‐oligosaccharides CD Crohn’s disease DBRPC Double‐blind randomized placebo controlled DCs Dendritic cells DP Degree of polymerization DSS Dextran sulfate sodium FOS Fructo‐oligosaccharides GalA Galacturonic acid GBF Germinated barley foodstuff GH Glycoside‐hydrolases GI tract Gastrointestinal tract GMO Oligosaccharides from goat milk GOS Galacto‐oligosaccharides HG Homogalacturonan IBD Inflammatory bowel disease IECs Intestinal epithelial cells IgA Immunoglobulin A IL Interleukin LPS Lipopolysaccharides LTA Lipoteichoic acids MAMPs Microorganism‐associated molecular patterns NF‐κB Nuclear factor kappa B OFI Oligofructose‐enriched inulin PAMPs Pathogen‐associated molecular patterns PG Peptidoglycans PRRs Pattern‐recognition receptors PCA Principal Component Analysis qPCR Quantitative Real‐Time PCR RGI Rhamnogalacturonan I RGII Rhamnogalacturonan II RPC Randomized placebo controlled SCFAs Short‐chain fatty acids SCID Severe combined immune deficiency SHIME Simulator of the human intestinal microbial ecosystem SPF Pathogen free conditions TLRs Toll‐like receptors TNBS Trinitrobenzene sulfonic acid TNF‐α Tumor Necrosis Factor‐alfa Treg cells Regulatory T cells UC Ulcerative colitis XOS Xylo‐oligosaccharides XIII

List <strong>of</strong> Manuscripts<br />

Not <strong>in</strong>cluded <strong>in</strong> this thesis<br />

Bergström, A., Licht, T.R., Wilcks, A., Grønlund, H., Andersen, J.B., Vigsnæs, L.K., and Bahl, M. The<br />

Gut Low Density Array ‘GULDA’ – A validated approach to rapid quantification <strong>of</strong> the key bacterial<br />

taxa present <strong>in</strong> <strong>in</strong>test<strong>in</strong>al samples. (2012) Paper <strong>in</strong> preparation.<br />

Vigsnæs, L.K., Nakai, H., Hemm<strong>in</strong>gsen, L., Laht<strong>in</strong>en, S., Rasmussen, L.E., Hachem, M.A., Meyer, A.S,<br />

Licht , T.R., Svensson, B. Selective <strong>in</strong> vitro growth <strong>of</strong> <strong>in</strong>dividual human gut bacteria on potential<br />

prebiotic oligosaccharides produced by chemoenzymatic synthesis. (2012) Paper <strong>in</strong> preparation.<br />

Vermeiren, J., Van den Abbeele, P., Laukens, D., Vigsnæs, L.K., Vos, M.D., Boon, N., and Van de<br />

Wiele, T. (2011) Decreased colonization <strong>of</strong> Clostridium cluster XIVa <strong>in</strong> an <strong>in</strong> vitro dynamic gut<br />

model dur<strong>in</strong>g <strong>in</strong>cubation <strong>of</strong> the fecal microbiota from ulcerative colitis patients. (2011) Submitted<br />

to FEMS Microbiology Ecology. DOI:10.1111/j.1574‐6941.2011.01252.x<br />

XII

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