Role of Intestinal Microbiota in Ulcerative Colitis

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62. Van den Abbeele P, Van de Wiele T, Verstraete W, Possemiers S. (2011) The host selects mucosal and luminal associations of coevolved gut microorganisms: a novel concept. FEMS Microbiology Reviews. 35:681‐704. 63. Van Tassell ML, Miller MJ. (2011) Lactobacillus Adhesion to Mucus. Nutrients. 3:613‐636. 64. Vigsnaes LK, Brynskov J, Wilcks A, Licht TR. (2011) Gram‐negative bacteria account for differences in faecal microbiota between patients with ulcerative colitis and healthy controls. Unpublished. 65. Walter J, Tannock GW, Tilsala‐Timisjarvi A, Rodtong S, Loach DM, Munro K et al.. (2000) Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species‐specific PCR primers. Applied and Environmental Microbiology. 66:297‐303. 66. Zeuthen LH, Fink LN, Metzdorff SB, Kristensen MB, Licht TR, Nellemann C et al.. (2010) Lactobacillus acidophilus induces a slow but more sustained chemokine and cytokine response in naive foetal enterocytes compared to commensal Escherichia coli. Bmc Immunology. doi: 10.1186/1471‐2172‐11‐2. 67. Zoetendal EG, von Wright A, Vilpponen‐Salmela T, Ben‐Amor K, Akkermans ADL, de Vos WM. (2002) Mucosa‐ associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Applied and Environmental Microbiology. 68:3401‐3407. 26
Methodology part Paper 3 Paper 3 In vitro Fermentation of Sugar Beet Arabino‐Oligosaccharides by Fecal Microbiota Obtained from Patients with Ulcerative Colitis Selectively Stimulates the Growth of Bifidobacterium spp. and Lactobacillus spp. Published in Applied and Environmental Microbiology (Page numbers are relative to paper) 97
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Role of Intestinal Microbiota in Ul
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Role of Intestinal Microbiota in Ul
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Preface Preface This thesis present
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Summary Summary The microbiota of t
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Dansk sammendrag Dansk sammendrag M
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Introduction and objectives Introdu
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List of Manuscripts Not included in
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List of contents List of Centents P
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List of Centents Methodology append
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1. The intestinal environment Theor
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Theoretical part 5 1. The intestina
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2. The colonic environment Theoreti
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Theoretical part 9 2. The colonic e
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Table 1: The presence of glycoside
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Theoretical part Figure 3: The colo
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3. Inflammatory Bowel disease Theor
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Theoretical part 17 3. Inflammatory
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Theoretical part 19 4. Modulation o
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Table 4: Clinical trials on the pre
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Theoretical part 5. Production of p
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Methodology part
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Methodology part 6. Methodology, co
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Introduction Methodology part 42 Pa
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Abstract Background Detailed knowle
Page 64 and 65: depending the level of disease acti
Page 66 and 67: in 1 x TAE at 60 °C for 16 h at 36
Page 68 and 69: Statistics PCA were generated by SA
Page 70 and 71: The PCA of the Gram‐positive bact
Page 72 and 73: layer of UC patients and found that
Page 74 and 75: Acknowledgements The authors thank
Page 76 and 77: Table 2 ‐ 16S rRNA gene and 16S
Page 78 and 79: 1. Firmicutes phylum 2. Bacteroidet
Page 80 and 81: Supplementary Figure S1. Dice clust
Page 82 and 83: Reference List 1. Ahmed S, Macfarla
Page 84 and 85: 32. Matsuki T, Watanabe K, Fujimoto
Page 87 and 88: Methodology part Paper 2 Fecal lact
Page 89 and 90: Fecal lactobacilli and bifidobacter
Page 91 and 92: Introduction The mucus layer lining
Page 93 and 94: efore enrolment and there was no si
Page 95 and 96: (Bio‐Rad Labs, Hercules, Californ
Page 97 and 98: Microbial community analysis using
Page 99 and 100: difference from the luminal microbi
Page 101 and 102: that C. coccoides group and C. lept
Page 103 and 104: Table 1 ‐ 16S rRNA gene of phylum
Page 105 and 106: Table 2 ‐ Preference of bacterial
Page 107 and 108: Figure 1. A) Schematic overview of
Page 109 and 110: A. B. Figure 3. Principal component
Page 111 and 112: 15. Fooks LJ, Gibson GR. (2002) In
Page 113: 47. Ouwehand AC, Suomalainen T, Tol
Page 117 and 118: APPLIED AND ENVIRONMENTAL MICROBIOL
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Page 128 and 129: Methodology part Introduction The a
Page 130 and 131: Journal of Agricultural and Food Ch
Page 139 and 140: Methodology part Paper 5 Paper 5 Ma
Page 141 and 142: Appl Microbiol Biotechnol (2011) 90
Page 153 and 154: Methodology part Paper 6 Tailored e
Page 155 and 156: Process Biochemistry 46 (2011) 1039
Page 157 and 158: Table 1 List of enzymes. Enzyme Sou
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[29] Bauer S, Vasu P, Persson S, Mo
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Methodology part 150
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Methodology part 152 Appendix 1 hor
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Appendix 3 Methodology part Appendi
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Methodology part 156 Appendix 3
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7. Discussion and perspectives Disc
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Discussion and conclusion 161 7. Di
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References References Abreu,M.T., V
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References Derrien,M., Vaughan,E.E.
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References Haarman,M. and Knol,J. (
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References Lantz,P.G., Matsson,M.,
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References Matsuki,T., Watanabe,K.,
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References Pullan,R.D., Thomas,G.A.
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References Tannock,G.W. (2010). Ana
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National Food Institute Technical U
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