Role of Intestinal Microbiota in Ulcerative Colitis
Role of Intestinal Microbiota in Ulcerative Colitis Role of Intestinal Microbiota in Ulcerative Colitis
Reference List 1. Ahmed S, Macfarlane GT, Fite A, Mcbain AJ, Gilbert P, Macfarlane S. (2007) Mucosa‐associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples. Applied and Environmental Microbiology. 73:7435‐7442. 2. Ardizzone S. (2003) Ulcerative Colitis. Orphanet encyclopedia. http://www.orpha.net/data/patho/GB/uk‐ UC.pdf. 3. Atarashi K, Tanoue T, Shima T, Imaoka A, Kuwahara T, Momose Y et al.. (2011) Induction of Colonic Regulatory T Cells by Indigenous Clostridium Species. Science. 331:337‐341. 4. Balamurugan R, Janardhan HP, George S, Raghava M, V, Muliyil J, Ramakrishna BS. (2008) Molecular studies of fecal anaerobic commensal bacteria in acute diarrhea in children. Journal of Pediatric Gastroenterology and Nutrition. 46:514‐519. 5. Bernbom N, Norrung B, Saadbye P, Molbak L, Vogensen FK, Licht TR. (2006) Comparison of methods and animal models commonly used for investigation of fecal microbiota: Effects of time, host and gender. Journal of Microbiological Methods. 66:87‐95. 6. Binder V. (1970) A Comparison Between Clinical State, Macroscopic and Microscopic Appearances of Rectal Mucosa, and Cytologic Picture of Mucosal Exudate in Ulcerative Colitis. Scandinavian Journal of Gastroenterology. 5:627‐632. 7. Chenoll E, Casinos B, Bataller E, Astals P, Echevarria J, Iglesias JR et al.. (2011) Novel Probiotic Bifidobacterium bifidum CECT 7366 Strain Active against the Pathogenic Bacterium Helicobacter pylori. Applied and Environmental Microbiology. 77:1335‐1343. 8. Collado MC, Derrien M, Isolauri E. (2007) Intestinal integrity and Akkermansia muciniphila, a mucin‐degrading member of the intestinal microbiota present in infants, adults, and the elderly. Applied and Environmental Microbiology. 73:7767‐7770. 9. Collado MC, Meriluoto J, Salminen S. (2007) In vitro analysis of probiotic strain combinations to inhibit pathogen adhesion to human intestinal mucus. Food Research International. 40:629‐636. 10. Delroisse JM, Boulvin AL, Parmentier I, Dauphin RD, Vandenbol M, Portetelle D. (2008) Quantification of Bifidobacterium spp. and Lactobacillus spp. in rat fecal samples by real‐time PCR. Microbiological Research. 163:663‐670. 11. Denman SE, McSweeney CS. (2006) Development of a real‐time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen. Fems Microbiology Ecology. 58:572‐582. 12. Derrien M, Van Baarlen.P, Hooiveld G, Norin E, Müller M, de Vos WM. (2011) Modulation of Mucosal Immune Response, Tolerance, and Proliferation in Mice Colonized by the Mucin‐Degrader Akkermansia muciniphila. Front Microbiol 2011. 2:1‐14. 13. Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M et al.. (2005) Diversity of the human intestinal microbial flora. Science. 308:1635‐1638. 14. Fite A, Macfarlane GT, Cummings JH, Hopkins MJ, Kong SC, Furrie E et al.. (2004) Identification and quantitation of mucosal and faecal desulfovibrios using real time polymerase chain reaction. Gut. 53:523‐529. 22
15. Fooks LJ, Gibson GR. (2002) In vitro investigations of the effect of probiotics and prebiotics on selected human intestinal pathogens. Fems Microbiology Ecology. 39:67‐75. 16. Frank DN, Amand ALS, Feldman RA, Boedeker EC, Harpaz N, Pace NR. (2007) Molecular‐phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proceedings of the National Academy of Sciences of the United States of America. 104:13780‐13785. 17. Gilad O, Svensson B, Viborg AH, Stuer‐Lauridsen B, Jacobsen S. (2011) The extracellular proteome of Bifidobacterium animalis subsp lactis BB‐12 reveals proteins with putative roles in probiotic effects. Proteomics. 11:2503‐2514. 18. Guilloteau P, Martin L, Eeckhaut V, Ducatelle R, Zabielski R, Van Immerseel F. (2010) From the gut to the peripheral tissues: the multiple effects of butyrate. Nutrition Research Reviews. 23:366‐384. 19. Guo X, Xia X, Tang R, Zhou J, Zhao H, Wang K. (2008) Development of a real‐time PCR method for Firmicutes and Bacteroidetes in faeces and its application to quantify intestinal population of obese and lean pigs. Letters in Applied Microbiology. 47:367‐373. 20. Heilig HGHJ, Zoetendal EG, Vaughan EE, Marteau P, Akkermans ADL, de Vos WM. (2002) Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Applied and Environmental Microbiology. 68:114‐123. 21. Hoarau C, Lagaraine C, Martin L, Velge‐Roussel F, Lebranchu Y. (2006) Supernatant of Bifidobacterium breve induces dendritic cell maturation, activation, and survival through a Toll‐like receptor 2 pathway. Journal of Allergy and Clinical Immunology. 117:696‐702. 22. Johansson MEV, Larsson JMH, Hansson GC. (2011) The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host‐microbial interactions. Proceedings of the National Academy of Sciences of the United States of America. 108:4659‐4665. 23. Johansson MEV, Phillipson M, Petersson J, Velcich A, Holm L, Hansson GC. (2008) The inner of the two Muc2 mucin‐dependent mucus layers in colon is devoid of bacteria. Proceedings of the National Academy of Sciences of the United States of America. 105:15064‐15069. 24. Kankainen M, Paulin L, Tynkkynen S, von Ossowski I, Reunanen J, Partanen P et al.. (2009) Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human‐mucus binding protein. Proceedings of the National Academy of Sciences of the United States of America. 106:17193‐17198. 25. Killer J, Marounek M. (2011) Fermentation of mucin by bifidobacteria from rectal samples of humans and rectal and intestinal samples of animals. Folia Microbiologica. 56:85‐89. 26. Kleerebezem M, Hols P, Bernard E, Rolain T, Zhou M, Siezen RJ et al.. (2010) The extracellular biology of the lactobacilli. FEMS Microbiology Reviews. 34:199‐230. 27. Kline KA, Falker S, Dahlberg S, Normark S, Henriques‐Normark B. (2009) Bacterial Adhesins in Host‐Microbe Interactions. Cell Host & Microbe. 5:580‐592. 28. Kornbluth A, Sachar DB. (2010) Ulcerative Colitis Practice Guidelines in Adults: American College of Gastroenterology, Practice Parameters Committee. American Journal of Gastroenterology. 105:501‐523. 29. Lang TA, Hansson GC, Samuelsson T. (2007) Gel‐forming mucins appeared early in metazoan evolution. Proceedings of the National Academy of Sciences of the United States of America. 104:16209‐16214. 30. Langholz E, Munkholm P, Davidsen M, Binder V. (1994) Course of Ulcerative‐Colitis ‐ Analysis of Changes in Disease‐Activity Over Years. Gastroenterology. 107:3‐11. 23
- Page 60 and 61: Introduction Methodology part 42 Pa
- Page 62 and 63: Abstract Background Detailed knowle
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- Page 74 and 75: Acknowledgements The authors thank
- Page 76 and 77: Table 2 ‐ 16S rRNA gene and 16S
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15. Fooks LJ, Gibson GR. (2002) In vitro <strong>in</strong>vestigations <strong>of</strong> the effect <strong>of</strong> probiotics and prebiotics on selected human<br />
<strong>in</strong>test<strong>in</strong>al pathogens. Fems Microbiology Ecology. 39:67‐75.<br />
16. Frank DN, Amand ALS, Feldman RA, Boedeker EC, Harpaz N, Pace NR. (2007) Molecular‐phylogenetic<br />
characterization <strong>of</strong> microbial community imbalances <strong>in</strong> human <strong>in</strong>flammatory bowel diseases. Proceed<strong>in</strong>gs <strong>of</strong> the<br />
National Academy <strong>of</strong> Sciences <strong>of</strong> the United States <strong>of</strong> America. 104:13780‐13785.<br />
17. Gilad O, Svensson B, Viborg AH, Stuer‐Lauridsen B, Jacobsen S. (2011) The extracellular proteome <strong>of</strong><br />
Bifidobacterium animalis subsp lactis BB‐12 reveals prote<strong>in</strong>s with putative roles <strong>in</strong> probiotic effects. Proteomics.<br />
11:2503‐2514.<br />
18. Guilloteau P, Mart<strong>in</strong> L, Eeckhaut V, Ducatelle R, Zabielski R, Van Immerseel F. (2010) From the gut to the<br />
peripheral tissues: the multiple effects <strong>of</strong> butyrate. Nutrition Research Reviews. 23:366‐384.<br />
19. Guo X, Xia X, Tang R, Zhou J, Zhao H, Wang K. (2008) Development <strong>of</strong> a real‐time PCR method for Firmicutes<br />
and Bacteroidetes <strong>in</strong> faeces and its application to quantify <strong>in</strong>test<strong>in</strong>al population <strong>of</strong> obese and lean pigs. Letters<br />
<strong>in</strong> Applied Microbiology. 47:367‐373.<br />
20. Heilig HGHJ, Zoetendal EG, Vaughan EE, Marteau P, Akkermans ADL, de Vos WM. (2002) Molecular diversity<br />
<strong>of</strong> Lactobacillus spp. and other lactic acid bacteria <strong>in</strong> the human <strong>in</strong>test<strong>in</strong>e as determ<strong>in</strong>ed by specific<br />
amplification <strong>of</strong> 16S ribosomal DNA. Applied and Environmental Microbiology. 68:114‐123.<br />
21. Hoarau C, Lagara<strong>in</strong>e C, Mart<strong>in</strong> L, Velge‐Roussel F, Lebranchu Y. (2006) Supernatant <strong>of</strong> Bifidobacterium breve<br />
<strong>in</strong>duces dendritic cell maturation, activation, and survival through a Toll‐like receptor 2 pathway. Journal <strong>of</strong><br />
Allergy and Cl<strong>in</strong>ical Immunology. 117:696‐702.<br />
22. Johansson MEV, Larsson JMH, Hansson GC. (2011) The two mucus layers <strong>of</strong> colon are organized by the MUC2<br />
muc<strong>in</strong>, whereas the outer layer is a legislator <strong>of</strong> host‐microbial <strong>in</strong>teractions. Proceed<strong>in</strong>gs <strong>of</strong> the National<br />
Academy <strong>of</strong> Sciences <strong>of</strong> the United States <strong>of</strong> America. 108:4659‐4665.<br />
23. Johansson MEV, Phillipson M, Petersson J, Velcich A, Holm L, Hansson GC. (2008) The <strong>in</strong>ner <strong>of</strong> the two Muc2<br />
muc<strong>in</strong>‐dependent mucus layers <strong>in</strong> colon is devoid <strong>of</strong> bacteria. Proceed<strong>in</strong>gs <strong>of</strong> the National Academy <strong>of</strong> Sciences<br />
<strong>of</strong> the United States <strong>of</strong> America. 105:15064‐15069.<br />
24. Kanka<strong>in</strong>en M, Paul<strong>in</strong> L, Tynkkynen S, von Ossowski I, Reunanen J, Partanen P et al.. (2009) Comparative<br />
genomic analysis <strong>of</strong> Lactobacillus rhamnosus GG reveals pili conta<strong>in</strong><strong>in</strong>g a human‐mucus b<strong>in</strong>d<strong>in</strong>g prote<strong>in</strong>.<br />
Proceed<strong>in</strong>gs <strong>of</strong> the National Academy <strong>of</strong> Sciences <strong>of</strong> the United States <strong>of</strong> America. 106:17193‐17198.<br />
25. Killer J, Marounek M. (2011) Fermentation <strong>of</strong> muc<strong>in</strong> by bifidobacteria from rectal samples <strong>of</strong> humans and<br />
rectal and <strong>in</strong>test<strong>in</strong>al samples <strong>of</strong> animals. Folia Microbiologica. 56:85‐89.<br />
26. Kleerebezem M, Hols P, Bernard E, Rola<strong>in</strong> T, Zhou M, Siezen RJ et al.. (2010) The extracellular biology <strong>of</strong> the<br />
lactobacilli. FEMS Microbiology Reviews. 34:199‐230.<br />
27. Kl<strong>in</strong>e KA, Falker S, Dahlberg S, Normark S, Henriques‐Normark B. (2009) Bacterial Adhes<strong>in</strong>s <strong>in</strong> Host‐Microbe<br />
Interactions. Cell Host & Microbe. 5:580‐592.<br />
28. Kornbluth A, Sachar DB. (2010) <strong>Ulcerative</strong> <strong>Colitis</strong> Practice Guidel<strong>in</strong>es <strong>in</strong> Adults: American College <strong>of</strong><br />
Gastroenterology, Practice Parameters Committee. American Journal <strong>of</strong> Gastroenterology. 105:501‐523.<br />
29. Lang TA, Hansson GC, Samuelsson T. (2007) Gel‐form<strong>in</strong>g muc<strong>in</strong>s appeared early <strong>in</strong> metazoan evolution.<br />
Proceed<strong>in</strong>gs <strong>of</strong> the National Academy <strong>of</strong> Sciences <strong>of</strong> the United States <strong>of</strong> America. 104:16209‐16214.<br />
30. Langholz E, Munkholm P, Davidsen M, B<strong>in</strong>der V. (1994) Course <strong>of</strong> <strong>Ulcerative</strong>‐<strong>Colitis</strong> ‐ Analysis <strong>of</strong> Changes <strong>in</strong><br />
Disease‐Activity Over Years. Gastroenterology. 107:3‐11.<br />
23
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