UNIVERSITY OF CALIFORNIA, SAN DIEGO

18 CALIFORNIA, SAN DIEGO
Chloe Zubieta, S. Sri Krishna, Daniel McMullan, Mitchell Based on Charged Derivatives of Gramicidin A, J. Am.
D. Miller, Polat Abdubek, Sanjay Agarwalla, Eileen Ambing, Chem. Soc, 129, 9737-9745 (2007).
Tamara Astakhova, Herbert L. Axelrod, Dennis Carlton, Petra Inbar, Mahealani R. Bautista, Stacy A. Takayama
Hsiu-Ju Chiu, Thomas Clayton, Marc Deller, Michael DiDo- and Jerry Yang, Assay To Screen for Molecules That Assonato,
Lian Duan, Marc-Andre Elsliger, Slawomir K. Grzech- ciate with Alzheimer’s Related �-Amyloid Fibrils, Anal.
nik, Joanna Hale, Eric Hampton, Gye Won Han, Justin Hau- Chem. (Washington, DC, U. S.), 80, 3502-3506 (2008).
gen, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock, Steven Blake, Ricardo Capone, Michael Mayer and Jerry
Mark W. Knuth, Eric Koesema, Abhinav Kumar, David Mar- Yang, Chemically Reactive Derivatives of Gramicidin A for
ciano, Andrew T. Morse, Edward Nigoghossian, Silvya Developing Ion Channel-Based Nanoprobes, Bioconjugate
Oommachen, Ron Reyes, Christopher L. Rife, Henry van den Chem, 19, 1614-1624 (2008).
Bedem, Dana Weekes, Aprilfawn White, Qingping Xu, Keith Michael Mayer, Vincent Semetey, Irina Gitlin, Jerry Yang
O. Hodgson, John Wooley, Ashley M. Deacon, Adam God- and George M. Whitesides, Using Ion Channel-Forming Pepzik,
Scott A. Lesley and Ian A. Wilson, Crystal structure of tides to Quantify Protein-Ligand Interactions, J. Am. Chem.
homoserine O-succinyltransferase from Bacillus cereus at 2.4 Soc, 130, 1453-1465 (2008).
Å resolution, Proteins: Struct., Funct., Bioinf, 68, 999-1005
(2007).
Steven Blake, Designing nanosensors based on ion chan-
K. Arima and J. Wooley, Metagenomics, Computational
Methods for Understanding Bacterial and Archaeal Genomes,
7, 345-396 (2008).
L. Weizhong, J. C. Wooley and A. Godzik, Probing metagenomics
by rapid cluster analysis of very large datasets,
PLoS one, 3, e3375 (2008).
Herbert L. Axelrod, Daniel McMullan, S. Sri Krishna,
Mitchell D. Miller, Marc-Andre Elsliger, Polat Abdubek, Eileen
Ambing, Tamara Astakhova, Dennis Carlton, Hsiu-Ju
Chiu, Thomas Clayton, Lian Duan, Julie Feuerhelm, Slawomir
K. Grzechnik, Joanna Hale, Gye Won Han, Justin
Haugen, Lukasz Jaroszewski, Kevin K. Jin, Heath E. Klock,
Mark W. Knuth, Eric Koesema, Andrew T. Morse, Edward
Nigoghossian, Linda Okach, Silvya Oommachen, Jessica
Paulsen, Kevin Quijano, Ron Reyes, Christopher L. Rife,
Henry van den Bedem, Dana Weekes, Aprilfawn White,
Guenter Wolf, Qingping Xu, Keith O. Hodgson, John Wooley,
Ashley M. Deacon, Adam Godzik, Scott A. Lesley and
Ian A. Wilson, Crystal structure of AICAR transformylase
IMP cyclohydrolase (TM1249) from Thermotoga maritima at
1.88 Å resolution, Proteins: Struct., Funct., Bioinf, 71, 1042-
1049 (2008).
Qingping Xu, Piotr Kozbial, Daniel McMullan, S. Sri
Krishna, Scott M. Brittain, Scott B. Ficarro, Michael DiDonato,
Mitchell D. Miller, Polat Abdubek, Herbert L. Axelrod,
Hsiu-Ju Chiu, Thomas Clayton, Lian Duan, Marc-Andre Elsliger,
Julie Feuerhelm, Slawomir K. Grzechnik, Joanna
Hale, Gye Won Han, Lukasz Jaroszewski, Heath E. Klock,
Andrew T. Morse, Edward Nigoghossian, Jessica Paulsen,
Ron Reyes, Christopher L. Rife, Henry van den Bedem,
Aprilfawn White, Keith O. Hodgson, John Wooley, Ashley
M. Deacon, Adam Godzik, Scott A. Lesley and Ian A. Wilson,
Crystal structure of an ADP-ribosylated protein with a
nel-forming peptides of gramicidin A. (D)
cytidine deaminase-like fold, but unknown function
(TM1506), from Thermotoga maritima at 2.70 Å resolution,
Proteins: Struct., Funct., Bioinf, 71, 1546-1552 (2008).
Piotr Kozbial, Qingping Xu, Hsiu-Ju Chiu, Daniel McMullan,
S. Sri Krishna, Mitchell D. Miller, Polat Abdubek, Claire
Acosta, Tamara Astakhova, Herbert L. Axelrod, Dennis Carlton,
Thomas Clayton, Marc Deller, Lian Duan, Ylva Elias,
Marc-Andre Elsliger, Julie Feuerhelm, Slawomir K. Grzechnik,
Joanna Hale, Gye Won Han, Lukasz Jaroszewski, Kevin
K. Jin, Heath E. Klock, Mark W. Knuth, Eric Koesema,
Abhinav Kumar, David Marciano, Andrew T. Morse, Kevin
D. Murphy, Edward Nigoghossian, Linda Okach, Silvya
Oommachen, Ron Reyes, Christopher L. Rife, Glen Spraggon,
Christina V. Trout, Henry van den Bedem, Dana
Weekes, Aprilfawn White, Guenter Wolf, Chloe Zubieta,
Keith O. Hodgson, John Wooley, Ashley M. Deacon, Adam
Godzik, Scott A. Lesley and Ian A. Wilson, Crystal structures
of MW1337R and lin2004: representatives of a novel
protein family that adopt a four-helical bundle fold, Proteins:
Struct., Funct., Bioinf, 71, 1589-1596 (2008).
L. Jaroszewski, L. Slabinski, J. Wooley, A. M. Deacon, S.
A. Lesley, I. A. Wilson and A. Godzik, Genome pool strategy
for structural coverage of protein families, Structure, 16,
1659-1667 (2008).
Lukasz Jaroszewski, Lukasz Slabinski, John Wooley, Ashley
M. Deacon, Scott A. Lesley, Ian A. Wilson and Adam
Godzik, Genome Pool Strategy for Structural Coverage of
Protein Families, Structure (Cambridge, MA, U. S.), 16,
1659-1667 (2008).
YANG, JERRY (b.1972) Assistant Professor. B.S,
1995, University of California, Berkeley; M.A, 1998,
Columbia University; M.Ph, 2000, Columbia University;
Ph.D, 2001, Columbia University. Postdoctoral Fellow,
2001-2003, Harvard University. Bioorganic Chemistry;
Biotechnology. Development of new therapeutics for Alzheimer’s
disease; construction of functional nanosensors
using artificial ion channels for use in medical and
environmental diagnostics; design and synthesis of cancer
drug delivery systems. TEL: (858) 534-6006 FAX:
(858) 534-4554
Web: www-chem.ucsd.edu/research/profile.cfm?cid=
C04652
Email: jerryyang@ucsd.edu
Seong Deok Kong, Alice Luong, Gerald Manorek, Stephen
B. Howell and Jerry Yang, Acidic Hydrolysis of N-
Ethoxybenzylimidazoles (NEBIs): Potential Applications as
pH-Sensitive Linkers for Drug Delivery, Bioconjugate Chem,
18, 293-296 (2007).
Ricardo Capone, Steven Blake, Marcela Rincon Restrepo,
Jerry Yang and Michael Mayer, Designing Nanosensors