note - FIZ Karlsruhe

Batch Search Mode
Advanced similarity searching
RUN BLAST searches may be run in an offline BATCH search mode. Once the command is
issued, the BATCH search begins immediately. Multiple BATCH requests may be queued, and
executed one after another. Up to sixteen queued BATCH queries are allowed in DGENE per
login ID, and the results must be collected in a future online session within three months. BATCH
search mode is also available for RUN GETSIM (page 32), and RUN GETSEQ (page 102).
To initiate an offline BATCH similarity search, add BATCH to the end of the RUN BLAST
command. STN will ask for a BATCH identifier (name), which can consist of up to 8 characters
of letters or numbers, e.g. PROTEIN1.
Initiation of Batch search
=> RUN GETSIM L1 /SQN BOTH BATCH
PLEASE ENTER BATCH IDENTIFIER (MAX. 8 CHARS):ACTIN2
TO BE NOTIFIED WHEN THIS BATCH SEARCH IS COMPLETE,
PLEASE ENTER YOUR EMAIL ADDRESS (MAX. 50 CHARS) OR "NONE"
INPUT: OR (END):robert.austin@fiz-karlsruhe.de
. . . .
BATCH PROCESSING STARTED FOR ACTIN2
Status Check
=> RUN GETBATCH ACTIN2
Please enter your batch identifier
or enter # for batch id list
or enter * for batch id at top of list
or enter - before batch id to delete
or enter . for (end)
REQUESTED BATCH RESULT FILE STILL RUNNING
Please enter your batch identifier
or enter # for batch id list
or enter * for batch id at top of list
or enter - before batch id to delete
or enter . for (end)
BATCH REQUEST:END
L1 is a sequence query e.g.
generated using the Query
Upload Wizard (page 14).
Enter a valid email address to
receive email notification when
the BATCH search is complete.
Use the RUN GETBATCH
command to check on the
status of BATCH searches.
GENESEQ on STN (DGENE) Workshop Manual | Page 79