note - FIZ Karlsruhe
note - FIZ Karlsruhe
note - FIZ Karlsruhe
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L2 ANSWER 20 OF 46 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN<br />
AN AEN13233 DNA DGENE<br />
TI Purified nucleic acid hybridizing with genomic RNA, for diagnostic<br />
methods, kits, vaccines, or antiviral therapy, is obtained from human T-<br />
cell lymphotropic virus.<br />
DESC HTLV-3 genomic sequence, SEQ ID NO:74.<br />
KW immunoassay; antibody; hybridization; diagnostic; microorganism<br />
detection; therapeutic; vaccine; coding sequence; ds.<br />
SQL 9050<br />
SCORE 547 88% of query self score 615<br />
ALIGN Smith-Waterman score: 547<br />
90 aa overlap starting at 338 (Frame 2 - 270 na overlap starting at 1013)<br />
gqifsrsaspiprpprglaahhwlnflqaayrlepgpssydfhqlkkflkialetparic<br />
:::: :::.::::::::::.:::::::::::::::::::::::::: ::.:::::. .:<br />
gqifprsanpiprpprglathhwlnflqaayrlepgpssydfhqlktvlkmaletpvwmc<br />
pinysllasllpkgypgrvneilhiliqtq<br />
:::::::::::::::::.:::::..:::::<br />
pinysllasllpkgypgqvneilqvliqtq<br />
. . . .<br />
L2 ANSWER 46 OF 46 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN<br />
AN AEN13239 DNA DGENE<br />
TI Purified nucleic acid hybridizing with genomic RNA, for diagnostic<br />
methods, kits, vaccines, or antiviral therapy, is obtained from human T-<br />
cell lymphotropic virus.<br />
DESC HTLV-3 genomic sequence, SEQ ID NO:80.<br />
KW immunoassay; antibody; hybridization; diagnostic; microorganism<br />
detection; therapeutic; vaccine; coding sequence; ds.<br />
SQL 8943<br />
SCORE 325 52% of query self score 615<br />
ALIGN Smith-Waterman score: 325<br />
74 aa overlap starting at 323 (Frame 2 - 222 na overlap starting at 968)<br />
gqifsrsaspiprpprglaahhwlnflqaayrlepgpssydfhqlkkflkialetparic<br />
:. :: :.:::. :.::: :::::::::::::.:::: .:::::.::::.:..::. .<br />
gktfsspanpipkapkglaihhwlnflqaayrlqpgpsefdfhqlrkflklaiktpvwln<br />
p_inysllasllpk<br />
: :. : :.: .::<br />
psitlsslgs_fpk<br />
<strong>note</strong><br />
Any Stop Codons in the nucleic acid answer sequence are indicated with an<br />
asterisk (*) in the TSQN translated protein ALIGN display. For example:<br />
rpprglaahhwlnflqaayrlepgpssydfhqlkkflkialetp__aricpinys__l_l<br />
::::: . . :..:.::: :: . . ..... : . . :.. . : :<br />
rpprgqglelwfefvqaagagf*gppplclmsctrmiqvldprpltssvmpvdvamrlcl<br />
GENESEQ on STN (DGENE) Workshop Manual | Page 77
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