note - FIZ Karlsruhe
note - FIZ Karlsruhe
note - FIZ Karlsruhe
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Advanced similarity searching<br />
Similarity<br />
Score<br />
496 |<br />
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The graphic representation gives a count of<br />
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hit sequences (x-axis) and similarity score (y-<br />
248 |||||||||||||||||||||||||| axis). The graph gives a visual clue about the<br />
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Answer Count 80 160 240 320 400<br />
ENTER EITHER THE NUMBER OF ANSWERS YOU WISH TO KEEP<br />
OR ENTER MINIMUM PERCENT OF SELF SCORE FOLLOWED BY %<br />
(BEST ANSWER PERCENTAGE OF SELF SCORE IS 100%)<br />
ENTER (ALL) OR ? :ALL<br />
L1 RUN STATEMENT CREATED<br />
L2 394 GGAAGAGACCCTGCAAGATGCAAGCCTTCAGAATCTGGGATGTTAACCAG<br />
AAGACCTTCTACATGAGGAATAACCAACTAGTTGCTGGATACTTGCAAGA<br />
ATCAAATACTAAATTACAAGAGAAGATAGATGTGGTGCCCATTGAGCCTG<br />
ATGCTCTATTCCTGGGACTCCATGGGAGGAAGCTGTGCCTGGCCTGTGTC<br />
AAGTCTGGTGATGAGATTAGGTTCCAATTGGAGGCAGTTAACATCACTGA<br />
/SQN.-F F<br />
Sort into in descending IDENT and descending SCORE order (L3)<br />
Answer set arranged by accession number; to sort by descending<br />
similarity score, enter at an arrow prompt (=>) "sor score d".<br />
=> SOR L2 IDENT D SCORE D<br />
PROCESSING COMPLETED FOR L2<br />
L3 394 SOR L2 IDENT D SCORE D<br />
In this example, ALL of<br />
the results are kept (L2).<br />
Page 70 | GENESEQ on STN (DGENE) Workshop Manual<br />
The initial results (L2) are sorted into<br />
descending (highest first) percent identity<br />
(IDENT) and descending BLAST score (L3).