note - FIZ Karlsruhe
note - FIZ Karlsruhe
note - FIZ Karlsruhe
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Display selected answers in a bibliographic format<br />
=> D BIB SCORE ALIGN<br />
Advanced similarity searching<br />
L3 ANSWER 1 OF 68 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN<br />
AN AAW87459 Protein DGENE Full-text<br />
TI Nucleic acids having banana bunchy top virus component sequences - used<br />
to design primers for use in polymerase chain reaction detection of the<br />
virus<br />
IN Soong T; Wu R; You L<br />
PA (BIOT-N) DEV CENT BIOTECHNOLOGY.<br />
PI US 5846705 A 19981208 27<br />
AI US 1995-418071 19950406<br />
PRAI US 1995-418071 19950406<br />
PSL Claim 11; Columns 25-26<br />
DT Patent<br />
LA English<br />
OS 1999-059037 [05]<br />
CR N-PSDB: AAV71832<br />
DESC BBTV DNA I clone (7-4-2) ORF V2 product DNA I-VI.<br />
SCORE 520 89% of query self score 582<br />
BLASTALIGN<br />
Query = 284 letters<br />
Length = 286<br />
Score = 520 bits (1338), Expect = e-152<br />
Identities = 247/282 (87%), Positives = 268/282 (94%)<br />
Query: 3 SFKWCFTLNYSSAAEREDFLALLKEEELNYAVVGDEVAPSSGQKHLQGYLSLKKSIKLGG<br />
S KWCFTLNYSSAAERE+FL+LLKEE+++YAVVGDEVAP++GQKHLQGYLSLKK I+LGG<br />
Sbjct: 5 SLKWCFTLNYSSAAERENFLSLLKEEDVHYAVVGDEVAPATGQKHLQGYLSLKKRIRLGG<br />
Query: 63 LKKKYSSRAHWERARGSDEDNAKYCSKETLILELGFPASQGSNRRKLSEMVSRSPERMRI<br />
LKKKY SRAHWE ARG+DE+N+KYCSK TLILELGFP GSN+RK+SEMV+RSP+RM+I<br />
Sbjct: 65 LKKKYGSRAHWEIARGTDEENSKYCSKGTLILELGFPVVNGSNKRKISEMVARSPDRMKI<br />
Query: 123 EQPEIYHRYTSVKKLKKFKEEFVHPCLDRPWQIQLTEAIDEEPDDRSIIWVYGPNGNEGK<br />
EQPEI+HRY SV KLKKFKEEFVHPCLD PWQIQLTEAIDEEPDDRSIIWVYGP GNEGK<br />
Sbjct: 125 EQPEIFHRYQSVNKLKKFKEEFVHPCLDSPWQIQLTEAIDEEPDDRSIIWVYGPYGNEGK<br />
Query: 183 STYAKSLMKKDWFYTRGGKKENILFSYVDEGSEKHIVFDIPRCNQDYLNYDVIEALKDRV<br />
STYAKSL+KKDWFYTRGGKKENILFSYVDEGS+KHIVFDIPRCNQDYLNYDVIEALKDRV<br />
Sbjct: 185 STYAKSLIKKDWFYTRGGKKENILFSYVDEGSDKHIVFDIPRCNQDYLNYDVIEALKDRV<br />
Query: 243 IESTKYKPIKLVELINIHVIVMANFMPEFCKISEDRIKIIYC 284<br />
IESTKYKPIK+VEL IHVIVMANFMP+FCKISEDRIKIIYC<br />
Sbjct: 245 IESTKYKPIKIVELGKIHVIVMANFMPDFCKISEDRIKIIYC 286<br />
<strong>note</strong><br />
Note: There are no Xs in the Query line of<br />
the ALIGN display (below) because the<br />
Low Complexity Filter was turned off (i.e.<br />
set to False – F). See page 25.<br />
The ALIGN display does not include the entire retrieved sequence nor even<br />
the entire searched query. Only the area of similarity between query and<br />
answer is displayed. To see the entire sequence the SEQ field must be<br />
displayed. ALIGN is a FREE-of-charge format.<br />
GENESEQ on STN (DGENE) Workshop Manual | Page 67
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