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L3 ANSWER 2 OF 68 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN
AN AAY90867 Protein DGENE
TI Two circular single-stranded DNAs associated with banana bunchy top virus
and detection of the virus -
DESC Banana bunchy top virus related protein sequence #1.
KW Banana bunchy top virus; BBTV; detection.
SQL 286
BLASTALIGN
Query = 284 letters
Length = 286
Score = 519 bits (1337), Expect = e-152
Identities = 247/282 (87%), Positives = 268/282 (94%)
Query: 3 SFKWCFTLNYSSAAEREDFLALLKEEELNYAVVGDEVAPSSGQKHLQGYLSLKKSIKLGG
S KWCFTLNYSSAAERE+FL+LLKEE+++YAVVGDEVAP++GQKHLQ YLSLKK I+LGG
Sbjct: 5 SLKWCFTLNYSSAAERENFLSLLKEEDVHYAVVGDEVAPATGQKHLQFYLSLKKRIRLGG
Query: 63 LKKKYSSRAHWERARGSDEDNAKYCSKETLILELGFPASQGSNRRKLSEMVSRSPERMRI
LKKKY SRAHWE ARG+DE+N+KYCSKETLILELGFP GSN+RK+SEMV+RSP+RM+I
Sbjct: 65 LKKKYGSRAHWELARGTDEENSKYCSKETLILELGFPVVNGSNKRKISEMVARSPDRMKI
Query: 123 EQPEIYHRYTSVKKLKKFKEEFVHPCLDRPWQIQLTEAIDEEPDDRSIIWVYGPNGNEGK
EQPEI+HRY SV KLKKFKEEFVHPCLD PWQIQLTEAIDEEPDDRSIIWVYGP GNEGK
Sbjct: 125 EQPEIFHRYQSVNKLKKFKEEFVHPCLDSPWQIQLTEAIDEEPDDRSIIWVYGPYGNEGK
Query: 183 STYAKSLMKKDWFYTRGGKKENILFSYVDEGSEKHIVFDIPRCNQDYLNYDVIEALKDRV
STYAKSL+KKDWFYTRGGKKENILFSYVDEGS+KHIVFDIPRCNQDYLNYDVIEALKDRV
Sbjct: 185 STYAKSLIKKDWFYTRGGKKENILFSYVDEGSDKHIVFDIPRCNQDYLNYDVIEALKDRV
Query: 243 IESTKYKPIKLVELINIHVIVMANFMPEFCKISEDRIKIIYC 284
IESTKYKPIK+VEL IHVIVMANFMP+FCKISEDRIKIIYC
Sbjct: 245 IESTKYKPIKIVELGKIHVIVMANFMPDFCKISEDRIKIIYC 286
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L3 ANSWER 4 OF 68 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN
AN AAY90868 Protein DGENE
TI Two circular single-stranded DNAs associated with banana bunchy top virus
and detection of the virus -
DESC Banana bunchy top virus related protein sequence #2.
KW Banana bunchy top virus; BBTV; detection.
SQL 285
BLASTALIGN
Query = 284 letters
Length = 285
Score = 337 bits (863), Expect = 2e-97
Identities = 170/288 (59%), Positives = 217/288 (75%), Gaps = 7/288 (2%
Query: 1 MSSFKWCFTLNYSSAAEREDFLALLKEEELNYAVVGDEVAPSSGQKHLQGYLSLKKSIKL
MSSFKWCFTLNYSSAAEREDFLALLKEE+++Y+VVGDEVAP++GQKHL GYLSLKKSI+L
Sbjct: 1 MSSFKWCFTLNYSSAAEREDFLALLKEEDVHYSVVGDEVAPATGQKHLGGYLSLKKSIRL
Query: 61 GGLKKKYSSRAHWERARGSDEDNAKYCSKETLILELGFPASQGSNRRKLSEMVSRSPERM
GGLKKKY SRAHWE A+GSDE N +YCSKETL+LELG P GS +RKL + SPE +
Sbjct: 61 GGLKKKYGSRAHWEIAKGSDEQNRRYCSKETLVLELGTPVVPGSKKRKLLDRFRESPEEL
Query: 121 RIEQPEIYHRYTSVKKLK--KFKEEFVHPCLDRPWQIQLTEAIDEEPDDRSIIWVYGPNG
+++ P Y R +V+ +K + E+VH + WQ +L + I+ PDDRSIIWVYGPNG
Sbjct: 121 KMDDPSKYRRCLAVESIKDARINSEWVHEL--KEWQNKLIQKIEGVPDDRSIIWVYGPNG
Query: 179 NEGKSTYAKSL-MKKDWFYTRGGKKENILFSYVDEGSEKHIVFDIPRCNQDYLNYDVIEA
EGKST+A+ L +K W Y GGK +++ + + + H + DIPR + DYLNY VIE
Sbjct: 179 GEGKSTFARYLSLKPGWGYINGGKTSDMMHIIIMD-PDNHWIIDIPRSHSDYLNYGVIEQ
Query: 238 LKDRVIESTKYKPIKL-VELINIHVIVMANFMPEFCKISEDRIKIIYC 284
+K+RV+ +TKY+P + + N+HVIVMAN + ++CKISEDRIKII C
Sbjct: 238 IKNRVLINTKYEPCVIRKDGQNVHVIVMANVLFDYCKISEDRIKIINC 285
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Page 66 | GENESEQ on STN (DGENE) Workshop Manual