note - FIZ Karlsruhe
note - FIZ Karlsruhe
note - FIZ Karlsruhe
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Sort similarity score descending<br />
Answer set arranged by accession number; to sort by descending<br />
similarity score, enter at an arrow prompt (=>) "sor score d".<br />
=> SOR SCORE D<br />
PROCESSING COMPLETED FOR L2<br />
L3 68 SOR L2 SCORE D<br />
Review using a free-of-charge format with alignment<br />
=> D TRIAL ALIGN 1-68<br />
Advanced similarity searching<br />
L3 ANSWER 1 OF 68 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN<br />
AN AAW87459 Protein DGENE<br />
TI Nucleic acids having banana bunchy top virus component sequences - used<br />
to design primers for use in polymerase chain reaction detection of the<br />
virus<br />
DESC BBTV DNA I clone (7-4-2) ORF V2 product DNA I-VI.<br />
KW Banana bunchy top virus; BBTV; PCR technique; plant; tissue; banana;<br />
Musa; phloem damage; aphid; nucleic acid detection.<br />
SQL 286<br />
BLASTALIGN<br />
Query = 284 letters<br />
Length = 286<br />
Score = 520 bits (1338), Expect = e-152<br />
Identities = 247/282 (87%), Positives = 268/282 (94%)<br />
Query: 3 SFKWCFTLNYSSAAEREDFLALLKEEELNYAVVGDEVAPSSGQKHLQGYLSLKKSIKLGG<br />
S KWCFTLNYSSAAERE+FL+LLKEE+++YAVVGDEVAP++GQKHLQGYLSLKK I+LGG<br />
Sbjct: 5 SLKWCFTLNYSSAAERENFLSLLKEEDVHYAVVGDEVAPATGQKHLQGYLSLKKRIRLGG<br />
Query: 63 LKKKYSSRAHWERARGSDEDNAKYCSKETLILELGFPASQGSNRRKLSEMVSRSPERMRI<br />
LKKKY SRAHWE ARG+DE+N+KYCSK TLILELGFP GSN+RK+SEMV+RSP+RM+I<br />
Sbjct: 65 LKKKYGSRAHWEIARGTDEENSKYCSKGTLILELGFPVVNGSNKRKISEMVARSPDRMKI<br />
Query: 123 EQPEIYHRYTSVKKLKKFKEEFVHPCLDRPWQIQLTEAIDEEPDDRSIIWVYGPNGNEGK<br />
EQPEI+HRY SV KLKKFKEEFVHPCLD PWQIQLTEAIDEEPDDRSIIWVYGP GNEGK<br />
Sbjct: 125 EQPEIFHRYQSVNKLKKFKEEFVHPCLDSPWQIQLTEAIDEEPDDRSIIWVYGPYGNEGK<br />
Query: 183 STYAKSLMKKDWFYTRGGKKENILFSYVDEGSEKHIVFDIPRCNQDYLNYDVIEALKDRV<br />
STYAKSL+KKDWFYTRGGKKENILFSYVDEGS+KHIVFDIPRCNQDYLNYDVIEALKDRV<br />
Sbjct: 185 STYAKSLIKKDWFYTRGGKKENILFSYVDEGSDKHIVFDIPRCNQDYLNYDVIEALKDRV<br />
Query: 243 IESTKYKPIKLVELINIHVIVMANFMPEFCKISEDRIKIIYC 284<br />
IESTKYKPIK+VEL IHVIVMANFMP+FCKISEDRIKIIYC<br />
Sbjct: 245 IESTKYKPIKIVELGKIHVIVMANFMPDFCKISEDRIKIIYC 286<br />
GENESEQ on STN (DGENE) Workshop Manual | Page 65