note - FIZ Karlsruhe

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L3 68 SOR L2 SCORE D
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L3 ANSWER 1 OF 68 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN
AN AAW87459 Protein DGENE
TI Nucleic acids having banana bunchy top virus component sequences - used
to design primers for use in polymerase chain reaction detection of the
virus
DESC BBTV DNA I clone (7-4-2) ORF V2 product DNA I-VI.
KW Banana bunchy top virus; BBTV; PCR technique; plant; tissue; banana;
Musa; phloem damage; aphid; nucleic acid detection.
SQL 286
BLASTALIGN
Query = 284 letters
Length = 286
Score = 520 bits (1338), Expect = e-152
Identities = 247/282 (87%), Positives = 268/282 (94%)
Query: 3 SFKWCFTLNYSSAAEREDFLALLKEEELNYAVVGDEVAPSSGQKHLQGYLSLKKSIKLGG
S KWCFTLNYSSAAERE+FL+LLKEE+++YAVVGDEVAP++GQKHLQGYLSLKK I+LGG
Sbjct: 5 SLKWCFTLNYSSAAERENFLSLLKEEDVHYAVVGDEVAPATGQKHLQGYLSLKKRIRLGG
Query: 63 LKKKYSSRAHWERARGSDEDNAKYCSKETLILELGFPASQGSNRRKLSEMVSRSPERMRI
LKKKY SRAHWE ARG+DE+N+KYCSK TLILELGFP GSN+RK+SEMV+RSP+RM+I
Sbjct: 65 LKKKYGSRAHWEIARGTDEENSKYCSKGTLILELGFPVVNGSNKRKISEMVARSPDRMKI
Query: 123 EQPEIYHRYTSVKKLKKFKEEFVHPCLDRPWQIQLTEAIDEEPDDRSIIWVYGPNGNEGK
EQPEI+HRY SV KLKKFKEEFVHPCLD PWQIQLTEAIDEEPDDRSIIWVYGP GNEGK
Sbjct: 125 EQPEIFHRYQSVNKLKKFKEEFVHPCLDSPWQIQLTEAIDEEPDDRSIIWVYGPYGNEGK
Query: 183 STYAKSLMKKDWFYTRGGKKENILFSYVDEGSEKHIVFDIPRCNQDYLNYDVIEALKDRV
STYAKSL+KKDWFYTRGGKKENILFSYVDEGS+KHIVFDIPRCNQDYLNYDVIEALKDRV
Sbjct: 185 STYAKSLIKKDWFYTRGGKKENILFSYVDEGSDKHIVFDIPRCNQDYLNYDVIEALKDRV
Query: 243 IESTKYKPIKLVELINIHVIVMANFMPEFCKISEDRIKIIYC 284
IESTKYKPIK+VEL IHVIVMANFMP+FCKISEDRIKIIYC
Sbjct: 245 IESTKYKPIKIVELGKIHVIVMANFMPDFCKISEDRIKIIYC 286
GENESEQ on STN (DGENE) Workshop Manual | Page 65