note - FIZ Karlsruhe
note - FIZ Karlsruhe
note - FIZ Karlsruhe
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Introduction to similarity searching<br />
Sort the answers by descending similarity score<br />
Answer set arranged by accession number; to sort by descending<br />
similarity score, enter at an arrow prompt (=>) "sor score d".<br />
=> SOR SCORE D<br />
PROCESSING COMPLETED FOR L2<br />
L3 45 SOR L2 SCORE D<br />
Sort the sequences by patent family with FSORT<br />
=> FSORT L3<br />
SET SMARTSELECT ON<br />
SET COMMAND COMPLETED<br />
SET HIGHLIGHTING OFF<br />
SET COMMAND COMPLETED<br />
SET AUDIT OFF<br />
SET COMMAND COMPLETED<br />
SEL L3 1- PN,APPS<br />
L4 SEL L3 1- PN APPS : 63 TERMS<br />
'L4' DELETED<br />
L4 45 FSO L3<br />
SET SMARTSELECT OFF<br />
SET COMMAND COMPLETED<br />
SET HIGHLIGHTING ON<br />
SET COMMAND COMPLETED<br />
SET AUDIT ON<br />
SET COMMAND COMPLETED<br />
10 Multi-record Families Answers 1-37<br />
Family 1 Answers 1-3<br />
Family 2 Answers 4-6<br />
Family 3 Answers 7-16<br />
Family 4 Answers 17-18<br />
Family 5 Answers 19-22<br />
Family 6 Answers 23-24<br />
Family 7 Answers 25-31<br />
Family 8 Answers 32-33<br />
Family 9 Answers 34-35<br />
Family 10 Answers 36-37<br />
8 Individual Records Answers 38-45<br />
0 Non-patent Records<br />
Display answers with DISPLAY PFAM<br />
=> DISPLAY PFAM<br />
ENTER (L4) OR L#: L4<br />
ENTER PATENT FAMILY NUMBER OR RANGE (1): 1-<br />
ENTER ANSWER NUMBER OR RANGE (1): 1<br />
ENTER DISPLAY FORMAT (BIB): TRI OS SCORE ALIGN<br />
Page 42 | GENESEQ on STN (DGENE) Workshop Manual<br />
FSORT can be used to group together<br />
sequence hits from the same publication,<br />
application and/or patent family for a more<br />
efficient review of the results retrieved.<br />
FSORT (L4) of the 45 BLAST answers (L3)<br />
reveals 18 patent family groups: 10 with<br />
multiple sequence answers for the search,<br />
and 8 with just one sequence hit each.<br />
Similarity Sort Order for L4:<br />
� The first record from Family 1 (Answer 1) is the best<br />
answer from the multi-record subset<br />
� The first record from Family 2 (Answer 4) is the most<br />
similar sequence from the next best multi-record family<br />
� The first record of the 8 Individual Records (Answer 38) is<br />
the most similar from the individual-record subset.<br />
DISPLAY PFAM is used<br />
here to display just the first<br />
sequence hit from each<br />
multi-record patent family