note - FIZ Karlsruhe

Introduction to similarity searching
L3 ANSWER 5 OF 58 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN
AN AWO91322 cDNA DGENE
TI Constructing GeneMap for longevity and aging related disorders comprises
identifying chromosomal loci associated with longevity.
DESC Longevity related cDNA sequence, SEQ ID 1204.
KW Longevity; aging; degeneration; genemap; ss.
SQL 695
BLASTALIGN
Query = 348 letters
Length = 695
Score = 230 bits (116), Expect = 1e-64
Identities = 260/308 (84%)
Strand = Plus / Plus
Query: 1 atgccaacagatcacgagcagccctgtggtcccaggcacaggtcattttgcctcaatggg
||||||||||||||||| |||||||||||||||| |||| ||| |||||||| ||||||
Sbjct: 185 atgccaacagatcacgaagagccctgtggtcccagtcacaagtcgttttgcctgaatggg
Query: 61 gggatttgttatgtgatccctactatccccagcccattctgtaggtgcattgaaaattac
||| ||||||||||||| |||||||| ||||||||||| ||||||||| ||||||| ||
Sbjct: 245 gggctttgttatgtgatacctactattcccagcccattttgtaggtgcgttgaaaactat
Query: 121 accggagcacgctgcgaagaggtttttctcccaagctccagcatcccaagcgaaagtaat
|| ||||| || || |||||||||||||||||| |||||||||||| || |||||||
Sbjct: 305 acaggagctcgttgtgaagaggtttttctcccaggctccagcatccaaactaaaagtaac
Query: 181 ctgtcggcagctttcgtggtgctggcggtcctcctcactcttaccatcgcggcgctctgc
|||| | |||||| |||| |||||||||| | || |||| ||| | || ||| |
Sbjct: 365 ctgtttgaagcttttgtggcattggcggtcctagtaacacttatcattggagccttctac
Query: 241 ttcctgtgcaggaagggccaccttcagagggccagttcagtccagtgtgagatcagcctg
||||| |||||||| |||||| ||||||| |||||||||||||||| ||| |||| ||||
Sbjct: 425 ttcctttgcaggaaaggccactttcagagagccagttcagtccagtatgatatcaacctg
Query: 301 gtagagac 308
||||||||
Sbjct: 485 gtagagac 492
. . . .
L3 ANSWER 58 OF 58 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN
AN AUL95563 DNA DGENE
TI New nucleic acid encoding cancer associated protein, useful for
detecting, diagnosing, preventing, and/or treating cancer.
DESC Mouse mD18-024 genomic DNA sequence, SEQ ID 1626.
KW Cytostatic; cancer; lymphoma; leukemia; carcinoma; gene; ds.
SQL 202251
BLASTALIGN
Query = 348 letters
Plus / Plus indicates that the query sequence is
Length = 202251
aligned to the single strand of the hit sequence.
Score = 40.1 bits (20), Expect = Plus 5e-05 / Minus indicates an alignment between query
Identities = 23/24 (95%)
sequence and complementary hit sequence strand.
Strand = Plus / Minus
Query: 18 gcagccctgtggtcccaggcacag 41
|||| |||||||||||||||||||
Sbjct: 28133 gcagacctgtggtcccaggcacag 28110
Page 30 | GENESEQ on STN (DGENE) Workshop Manual