note - FIZ Karlsruhe
note - FIZ Karlsruhe
note - FIZ Karlsruhe
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Display selected answers in a bibliographic format<br />
=> D BIB SCORE ALIGN<br />
Introduction to similarity searching<br />
L3 ANSWER 1 OF 45 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN<br />
AN AAY90867 Protein DGENE<br />
TI Two circular single-stranded DNAs associated with banana bunchy top virus<br />
and detection of the virus -<br />
IN Wu R; You L; Sonq T<br />
PA (BIOT-N) DEV CENT BIOTECHNOLOGY.<br />
PI TW 360710 A 19990611 7<br />
AI TW 1994-106105 19940630<br />
PRAI TW 1994-106105 19940630<br />
PSL Disclosure; Page 7<br />
DT Patent<br />
LA Chinese<br />
OS 2000-316145 [27]<br />
DESC Banana bunchy top virus related protein sequence #1.<br />
SCORE 457 89% of query self score 510<br />
BLASTALIGN<br />
Note: The Xs in the Query line of the ALIGN<br />
Query = 284 letters<br />
display (below) represent fragments filtered by<br />
Length = 286<br />
the BLAST Low Complexity Filter. See page 63.<br />
Score = 457 bits (1176), Expect = e-133<br />
Identities = 220/282 (78%), Positives = 240/282 (85%)<br />
Query: 3 SFKWCFTLNYSSAAEREDFLALLKEEELNYAVVGDEVAPSSGQKHLQXXXXXXXXXXXXX<br />
S KWCFTLNYSSAAERE+FL+LLKEE+++YAVVGDEVAP++GQKHLQ<br />
Sbjct: 5 SLKWCFTLNYSSAAERENFLSLLKEEDVHYAVVGDEVAPATGQKHLQFYLSLKKRIRLGG<br />
Query: 63 XXXXXXXRAHWERARGSDEDNAKYCSKETLILELGFPASQGSNRRKLSEMVSRSPERMRI<br />
RAHWE ARG+DE+N+KYCSKETLILELGFP GSN+RK+SEMV+RSP+RM+I<br />
Sbjct: 65 LKKKYGSRAHWELARGTDEENSKYCSKETLILELGFPVVNGSNKRKISEMVARSPDRMKI<br />
Query: 123 EQPEIYHRYTSXXXXXXXXXXXXHPCLDRPWQIQLTEAIDEEPDDRSIIWVYGPNGNEGK<br />
EQPEI+HRY S HPCLD PWQIQLTEAIDEEPDDRSIIWVYGP GNEGK<br />
Sbjct: 125 EQPEIFHRYQSVNKLKKFKEEFVHPCLDSPWQIQLTEAIDEEPDDRSIIWVYGPYGNEGK<br />
Query: 183 STYAKSLMKKDWFYTRGGKKENILFSYVDEGSEKHIVFDIPRCNQDYLNYDVIEALKDRV<br />
STYAKSL+KKDWFYTRGGKKENILFSYVDEGS+KHIVFDIPRCNQDYLNYDVIEALKDRV<br />
Sbjct: 185 STYAKSLIKKDWFYTRGGKKENILFSYVDEGSDKHIVFDIPRCNQDYLNYDVIEALKDRV<br />
Query: 243 IESTKYKPIKLVELINIHVIVMANFMPEFCKISEDRIKIIYC 284<br />
IESTKYKPIK+VEL IHVIVMANFMP+FCKISEDRIKIIYC<br />
Sbjct: 245 IESTKYKPIKIVELGKIHVIVMANFMPDFCKISEDRIKIIYC 286<br />
<strong>note</strong><br />
The ALIGN display does not include the entire retrieved sequence nor even<br />
the entire searched query. Only the area of similarity between query and<br />
answer is displayed. To see the entire sequence the SEQ field must be<br />
displayed. ALIGN is a FREE-of-charge format.<br />
GENESEQ on STN (DGENE) Workshop Manual | Page 25
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