note - FIZ Karlsruhe

Introduction to similarity searching
L3 ANSWER 4 OF 45 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN
AN AAY90868 Protein DGENE
TI Two circular single-stranded DNAs associated with banana bunchy top virus
and detection of the virus -
DESC Banana bunchy top virus related protein sequence #2.
KW Banana bunchy top virus; BBTV; detection.
SQL 285
BLASTALIGN
Query = 284 letters
Length = 285
Score = 285 bits (728), Expect = 1e-81
Identities = 147/286 (51%), Positives = 189/286 (65%), Gaps = 3/286 (1%
Query: 1 MSSFKWCFTLNYSSAAEREDFLALLKEEELNYAVVGDEVAPSSGQKHLQXXXXXXXXXXX
MSSFKWCFTLNYSSAAEREDFLALLKEE+++Y+VVGDEVAP++GQKHL
Sbjct: 1 MSSFKWCFTLNYSSAAEREDFLALLKEEDVHYSVVGDEVAPATGQKHLGGYLSLKKSIRL
Query: 61 XXXXXXXXXRAHWERARGSDEDNAKYCSKETLILELGFPASQGSNRRKLSEMVSRSPERM
RAHWE A+GSDE N +YCSKETL+LELG P GS +RKL + SPE +
Sbjct: 61 GGLKKKYGSRAHWEIAKGSDEQNRRYCSKETLVLELGTPVVPGSKKRKLLDRFRESPEEL
Query: 121 RIEQPEIYHRYTSXXXXXXXXXXXXHPCLDRPWQIQLTEAIDEEPDDRSIIWVYGPNGNE
+++ P Y R + + WQ +L + I+ PDDRSIIWVYGPNG E
Sbjct: 121 KMDDPSKYRRCLAVESIKDARINSEWVHELKEWQNKLIQKIEGVPDDRSIIWVYGPNGGE
Query: 181 GKSTYAKSL-MKKDWFYTRGGKKENILFSYVDEGSEKHIVFDIPRCNQDYLNYDVIEALK
GKST+A+ L +K W Y GGK +++ + + + H + DIPR + DYLNY VIE +K
Sbjct: 181 GKSTFARYLSLKPGWGYINGGKTSDMMHIIIMD-PDNHWIIDIPRSHSDYLNYGVIEQIK
Query: 240 DRVIESTKYKPIKL-VELINIHVIVMANFMPEFCKISEDRIKIIYC 284
+RV+ +TKY+P + + N+HVIVMAN + ++CKISEDRIKII C
Sbjct: 240 NRVLINTKYEPCVIRKDGQNVHVIVMANVLFDYCKISEDRIKIINC 285
. . . .
L3 ANSWER 45 OF 45 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN
AN ATT23792 peptide DGENE
TI Identifying virus, organism or malignancy with a higher lethality
comprises determining the Replikin Count of the Replikin Peak Gene of the
virus, organism or malignancy to the Replikin Count of the Replikin Peak
Gene.
DESC Replikin count related Porcine circovirus polyprotein, SEQ ID 429.
KW immune stimulation; diagnostic test; prophylactic to disease;
therapeutic; vaccine; antiviral; vaccine; anticancer; lung tumor;
cytostatic; respiratory-gen.; virucide; viral infection; polyprotein.
SQL 37
BLASTALIGN
Query = 284 letters
Length = 37
Score = 33.1 bits (74), Expect = 8e-07
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 70 RAHWERARGSDEDNAKYCSKE 90
R H E+A+G+D+ N +YCSKE
Sbjct: 15 RCHIEKAKGTDQQNKEYCSKE 35
Page 24 | GENESEQ on STN (DGENE) Workshop Manual