note - FIZ Karlsruhe

Sort the answers by descending similarity score
Answer set arranged by accession number; to sort by descending
similarity score, enter at an arrow prompt (=>) "sor score d".
=> SOR SCORE D
PROCESSING COMPLETED FOR L2
L3 45 SOR L2 SCORE D
Review using a free-of-charge format with alignment
=> D TRIAL ALIGN 1-45
Introduction to similarity searching
L3 ANSWER 1 OF 45 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN
AN AAY90867 Protein DGENE
TI Two circular single-stranded DNAs associated with banana bunchy top virus
and detection of the virus -
DESC Banana bunchy top virus related protein sequence #1.
KW Banana bunchy top virus; BBTV; detection.
SQL 286
BLASTALIGN
Query = 284 letters
Length = 286
Score = 457 bits (1176), Expect = e-133
Identities = 220/282 (78%), Positives = 240/282 (85%)
Query: 3 SFKWCFTLNYSSAAEREDFLALLKEEELNYAVVGDEVAPSSGQKHLQXXXXXXXXXXXXX
S KWCFTLNYSSAAERE+FL+LLKEE+++YAVVGDEVAP++GQKHLQ
Sbjct: 5 SLKWCFTLNYSSAAERENFLSLLKEEDVHYAVVGDEVAPATGQKHLQFYLSLKKRIRLGG
The ALIGN display:
Query: 63 XXXXXXXRAHWERARGSDEDNAKYCSKETLILELGFPASQGSNRRKLSEMVSRSPERMRI
RAHWE ARG+DE+N+KYCSKETLILELGFP GSN+RK+SEMV+RSP+RM+I
� First line: portion of
Sbjct: 65 LKKKYGSRAHWELARGTDEENSKYCSKETLILELGFPVVNGSNKRKISEMVARSPDRMKI
query with similarity
Query: 123 EQPEIYHRYTSXXXXXXXXXXXXHPCLDRPWQIQLTEAIDEEPDDRSIIWVYGPNGNEGK
� Second line: similarity
EQPEI+HRY S HPCLD PWQIQLTEAIDEEPDDRSIIWVYGP (repeated letters GNEGK - match,
Sbjct: 125 EQPEIFHRYQSVNKLKKFKEEFVHPCLDSPWQIQLTEAIDEEPDDRSIIWVYGPYGNEGK
blank - no match, plus
Query: 183 STYAKSLMKKDWFYTRGGKKENILFSYVDEGSEKHIVFDIPRCNQDYLNYDVIEALKDRV
(+) - family match)
STYAKSL+KKDWFYTRGGKKENILFSYVDEGS+KHIVFDIPRCNQDYLNYDVIEALKDRV
� Third line: portion of
Sbjct: 185 STYAKSLIKKDWFYTRGGKKENILFSYVDEGSDKHIVFDIPRCNQDYLNYDVIEALKDRV
retrieved (subject)
Query: 243 IESTKYKPIKLVELINIHVIVMANFMPEFCKISEDRIKIIYC 284 sequence with similarity
IESTKYKPIK+VEL IHVIVMANFMP+FCKISEDRIKIIYC
Sbjct: 245 IESTKYKPIKIVELGKIHVIVMANFMPDFCKISEDRIKIIYC 286
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GENESEQ on STN (DGENE) Workshop Manual | Page 23