note - FIZ Karlsruhe
note - FIZ Karlsruhe
note - FIZ Karlsruhe
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Sort the answers by descending similarity score<br />
Answer set arranged by accession number; to sort by descending<br />
similarity score, enter at an arrow prompt (=>) "sor score d".<br />
=> SOR SCORE D<br />
PROCESSING COMPLETED FOR L2<br />
L3 45 SOR L2 SCORE D<br />
Review using a free-of-charge format with alignment<br />
=> D TRIAL ALIGN 1-45<br />
Introduction to similarity searching<br />
L3 ANSWER 1 OF 45 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN<br />
AN AAY90867 Protein DGENE<br />
TI Two circular single-stranded DNAs associated with banana bunchy top virus<br />
and detection of the virus -<br />
DESC Banana bunchy top virus related protein sequence #1.<br />
KW Banana bunchy top virus; BBTV; detection.<br />
SQL 286<br />
BLASTALIGN<br />
Query = 284 letters<br />
Length = 286<br />
Score = 457 bits (1176), Expect = e-133<br />
Identities = 220/282 (78%), Positives = 240/282 (85%)<br />
Query: 3 SFKWCFTLNYSSAAEREDFLALLKEEELNYAVVGDEVAPSSGQKHLQXXXXXXXXXXXXX<br />
S KWCFTLNYSSAAERE+FL+LLKEE+++YAVVGDEVAP++GQKHLQ<br />
Sbjct: 5 SLKWCFTLNYSSAAERENFLSLLKEEDVHYAVVGDEVAPATGQKHLQFYLSLKKRIRLGG<br />
The ALIGN display:<br />
Query: 63 XXXXXXXRAHWERARGSDEDNAKYCSKETLILELGFPASQGSNRRKLSEMVSRSPERMRI<br />
RAHWE ARG+DE+N+KYCSKETLILELGFP GSN+RK+SEMV+RSP+RM+I<br />
� First line: portion of<br />
Sbjct: 65 LKKKYGSRAHWELARGTDEENSKYCSKETLILELGFPVVNGSNKRKISEMVARSPDRMKI<br />
query with similarity<br />
Query: 123 EQPEIYHRYTSXXXXXXXXXXXXHPCLDRPWQIQLTEAIDEEPDDRSIIWVYGPNGNEGK<br />
� Second line: similarity<br />
EQPEI+HRY S HPCLD PWQIQLTEAIDEEPDDRSIIWVYGP (repeated letters GNEGK - match,<br />
Sbjct: 125 EQPEIFHRYQSVNKLKKFKEEFVHPCLDSPWQIQLTEAIDEEPDDRSIIWVYGPYGNEGK<br />
blank - no match, plus<br />
Query: 183 STYAKSLMKKDWFYTRGGKKENILFSYVDEGSEKHIVFDIPRCNQDYLNYDVIEALKDRV<br />
(+) - family match)<br />
STYAKSL+KKDWFYTRGGKKENILFSYVDEGS+KHIVFDIPRCNQDYLNYDVIEALKDRV<br />
� Third line: portion of<br />
Sbjct: 185 STYAKSLIKKDWFYTRGGKKENILFSYVDEGSDKHIVFDIPRCNQDYLNYDVIEALKDRV<br />
retrieved (subject)<br />
Query: 243 IESTKYKPIKLVELINIHVIVMANFMPEFCKISEDRIKIIYC 284 sequence with similarity<br />
IESTKYKPIK+VEL IHVIVMANFMP+FCKISEDRIKIIYC<br />
Sbjct: 245 IESTKYKPIKIVELGKIHVIVMANFMPDFCKISEDRIKIIYC 286<br />
. . . .<br />
GENESEQ on STN (DGENE) Workshop Manual | Page 23