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GENESEQ TM STN ® WORKSHOP MANUAL
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Contents DATABASE CONTENT .........
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DATABASE CONTENT In this section, y
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How to read a DGENE record Database
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Patent family and legal status info
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INTRODUCTION TO SIMILARITY SEARCHIN
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GETSIM Introduction to similarity s
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The uploaded sequence text file bec
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Introduction to similarity searchin
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Introduction to similarity searchin
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Prepare the query offline Prepare y
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Sort the answers by descending simi
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Display selected answers in a bibli
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Prepare the query offline Prepare y
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Sort similarity score descending An
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Display selected answers in a bibli
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9590 ANSWERS FOUND ABOVE A THRESHOL
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Display selected answers in a bibli
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RUN GETSIM for a SQN BOTH search In
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Display selected answers in a bibli
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Upload the sequence and conduct a B
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Introduction to similarity searchin
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ADVANCED SIMILARITY SEARCHING In th
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RUN BLAST Advanced similarity searc
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BLAST advanced options Advanced sim
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Altering BLAST parameters Advanced
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Sort the answer set according to si
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9913 ANSWERS FOUND BELOW EXPECTATIO
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Advanced similarity searching L4 AN
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Run a BLAST similarity search with
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Display some records with alignment
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Protein sequences: switching off th
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Sort similarity score descending An
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Display selected answers in a bibli
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Upload the sequence query text file
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Review the answers using IDENT and
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Display selected answers in a bibli
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RUN GETSIM using the translated (/T
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. . . . Advanced similarity searchi
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Batch Search Mode Advanced similari
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Collection of Batch Results Advance
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Current Awareness Alert Searching A
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CURRENT RESULTS AVAILABLE NAME RUN
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TEXT AND BIBLIOGRAPHIC In this sect
- Page 89 and 90: Additional search indexes Text and
- Page 91 and 92: Sorting answer sets Text and Biblio
- Page 93 and 94: Prepare and save the query Prepare
- Page 95 and 96: 341 ANSWERS FOUND BELOW EXPECTATION
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- Page 99 and 100: Display selected answers in a prefe
- Page 101 and 102: SEQUENCE CODE MATCH SEARCHING In th
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- Page 105 and 106: Protein EXACT Search GETSEQ search
- Page 107 and 108: Protein EXACT FAMILY Search Sequenc
- Page 109 and 110: Protein SUBSEQUENCE Search Sequence
- Page 111 and 112: Protein SUBSEQUENCE FAMILY Search S
- Page 113 and 114: Nucleic acid EXACT Search Sequence
- Page 115 and 116: Nucleic Acid SUBSEQUENCE Search Seq
- Page 117 and 118: Using variability symbols Sequence
- Page 119 and 120: Excluding residues Sequence Code Ma
- Page 121 and 122: Repeat the search with the compleme
- Page 123 and 124: APPENDICES This section includes ap
- Page 125 and 126: Three letter codes 3-Letter Code 1-
- Page 127 and 128: III: Universal Genetic Code Table A
- Page 129 and 130: Nucleic acids Appendices Nucleotide
- Page 131 and 132: Appendices Feature Definition termi
- Page 133 and 134: Search fields VI: DGENE search and
- Page 135 and 136: VII: Variability Symbols for GETSEQ
- Page 137 and 138: VIII: BLAST advanced options Parame
- Page 139: IX: Sequence Search Query Limits Ap