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Sequence Code Match Searching Page 122 | GENESEQ on STN (DGENE) Workshop Manual
APPENDICES This section includes appendices for: I. Amino acids (three and one letter symbols) II. Nucleotides (including ambiguity codes) III. Universal Genetic Code translation table IV. Feature keys in DGENE feature tables V. Molecule Type codes VI. DGENE search and display fields VII. Variability and concatenation symbols for GETSEQ VIII. BLAST advanced options IX. Search query limits for GETSEQ, GETSIM and BLAST
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GENESEQ TM STN ® WORKSHOP MANUAL
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Contents DATABASE CONTENT .........
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DATABASE CONTENT In this section, y
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How to read a DGENE record Database
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Patent family and legal status info
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INTRODUCTION TO SIMILARITY SEARCHIN
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GETSIM Introduction to similarity s
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The uploaded sequence text file bec
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Introduction to similarity searchin
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Prepare the query offline Prepare y
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Sort the answers by descending simi
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Display selected answers in a bibli
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Prepare the query offline Prepare y
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Sort similarity score descending An
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9590 ANSWERS FOUND ABOVE A THRESHOL
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RUN GETSIM for a SQN BOTH search In
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Upload the sequence and conduct a B
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ADVANCED SIMILARITY SEARCHING In th
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RUN BLAST Advanced similarity searc
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BLAST advanced options Advanced sim
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Altering BLAST parameters Advanced
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Sort the answer set according to si
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9913 ANSWERS FOUND BELOW EXPECTATIO
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Advanced similarity searching L4 AN
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Run a BLAST similarity search with
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Display some records with alignment
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Protein sequences: switching off th
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Sort similarity score descending An
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Upload the sequence query text file
Page 71 and 72: Review the answers using IDENT and
Page 73 and 74: Display selected answers in a bibli
Page 75 and 76: RUN GETSIM using the translated (/T
Page 77 and 78: . . . . Advanced similarity searchi
Page 79 and 80: Batch Search Mode Advanced similari
Page 81 and 82: Collection of Batch Results Advance
Page 83 and 84: Current Awareness Alert Searching A
Page 85 and 86: CURRENT RESULTS AVAILABLE NAME RUN
Page 87 and 88: TEXT AND BIBLIOGRAPHIC In this sect
Page 89 and 90: Additional search indexes Text and
Page 91 and 92: Sorting answer sets Text and Biblio
Page 93 and 94: Prepare and save the query Prepare
Page 95 and 96: 341 ANSWERS FOUND BELOW EXPECTATION
Page 97 and 98: Text and Bibliographic searching Re
Page 99 and 100: Display selected answers in a prefe
Page 101 and 102: SEQUENCE CODE MATCH SEARCHING In th
Page 103 and 104: Sequence Code Match Searching Exact
Page 105 and 106: Protein EXACT Search GETSEQ search
Page 107 and 108: Protein EXACT FAMILY Search Sequenc
Page 109 and 110: Protein SUBSEQUENCE Search Sequence
Page 111 and 112: Protein SUBSEQUENCE FAMILY Search S
Page 113 and 114: Nucleic acid EXACT Search Sequence
Page 115 and 116: Nucleic Acid SUBSEQUENCE Search Seq
Page 117 and 118: Using variability symbols Sequence
Page 119 and 120: Excluding residues Sequence Code Ma
Page 121: Repeat the search with the compleme
Page 125 and 126: Three letter codes 3-Letter Code 1-
Page 127 and 128: III: Universal Genetic Code Table A
Page 129 and 130: Nucleic acids Appendices Nucleotide
Page 131 and 132: Appendices Feature Definition termi
Page 133 and 134: Search fields VI: DGENE search and
Page 135 and 136: VII: Variability Symbols for GETSEQ
Page 137 and 138: VIII: BLAST advanced options Parame
Page 139 and 140: IX: Sequence Search Query Limits Ap
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