note - FIZ Karlsruhe
note - FIZ Karlsruhe
note - FIZ Karlsruhe
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Nucleic acid EXACT Search<br />
Sequence Code Match Searching<br />
Searching of nucleic acids is similar to polypeptide sequence searching, except that there are no<br />
FAMILY search options available for nucleic acids. However nucleotide ambiguity codes can be<br />
used to specify base alternatives (see page 126).<br />
Search Question: Find patent references for the following nucleotide sequence:<br />
GACCAGCCCCAAGATGACTATC<br />
Search Strategy<br />
To find nucleic acid sequences in DGENE…<br />
Step 1 Nucleic acid EXACT search<br />
Step 2 Display sequence and patent family details<br />
Nucleic acid exact search<br />
=> RUN GETSEQ GACCAGCCCCAAGATGACTATC/SQEN<br />
RUN GETSEQ AT 18:26:43 ON 30 DEC 2010<br />
COPYRIGHT (C) 2010 <strong>FIZ</strong> KARLSRUHE GMBH<br />
L1 RUN STATEMENT CREATED<br />
L1 1 GACCAGCCCCAAGATGACTATC/SQEN<br />
Review answers retrieved in a free-of-charge format, including GETSEQ ALIGN (HIT)<br />
=> D TRI ALIGN<br />
L1 ANSWER 1 OF 1 DGENE COPYRIGHT 2010 THOMSON REUTERS on STN<br />
AN AAV64044 DNA DGENE<br />
TI Obtaining genomic and diagnostic marker from single collection step - by<br />
placing sample on bibulous solid support and extracting diagnostic and<br />
genomic marker<br />
DESC Human chemokine receptor 5 gene PCR primer #2.<br />
KW Human; chemokine receptor 5; CKR5; PCR primer; diagnosis; serum based<br />
assay; detection; genomic information; ss.<br />
SQL 22<br />
SEQ<br />
gaccagcccc aagatgacta tc<br />
========== ========== ==<br />
HITS AT: 1-22<br />
The ALIGN display shows the<br />
area of the hit sequence which is<br />
a match to the query.<br />
GENESEQ on STN (DGENE) Workshop Manual | Page 113
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