note - FIZ Karlsruhe
note - FIZ Karlsruhe
note - FIZ Karlsruhe
Create successful ePaper yourself
Turn your PDF publications into a flip-book with our unique Google optimized e-Paper software.
Protein SUBSEQUENCE Search<br />
Sequence Code Match Searching<br />
SUBSEQUENCE searching is a method for searching amino acid sequence fragments within<br />
larger polypeptides. The following example illustrates the use of this search technique.<br />
Search Question: Find patents for proteins that match the following string<br />
DSDGLAPPQHLIRV – look for exact matches, family equivalents, or<br />
embedded in larger sequences of 200-400 amino acids<br />
Search Strategy<br />
To find protein subsequence answers DGENE…<br />
Step 1 Run the sequence search<br />
Step 2 Limit to the sequence length range<br />
Step 3 Display the sequence and patent information<br />
Run the subsequence search<br />
=> RUN GETSEQ DSDGLAPPQHLIRV/SQSP<br />
RUN GETSEQ AT 19:15:37 ON 30 DEC 2010<br />
COPYRIGHT (C) 2010 <strong>FIZ</strong> KARLSRUHE GMBH<br />
L1 RUN STATEMENT CREATED<br />
L1 400 DSDGLAPPQHLIRV/SQSP<br />
Limit by sequence length range<br />
=> S L1 AND 200-400/SQL<br />
3823320 200-400/SQL<br />
L2 318 L1 AND 200-400/SQL<br />
GENESEQ on STN (DGENE) Workshop Manual | Page 109
Change language