The Mitochondrial Free Radical Theory of Aging - Supernova: Pliki
The Mitochondrial Free Radical Theory of Aging - Supernova: Pliki The Mitochondrial Free Radical Theory of Aging - Supernova: Pliki
CONTENTS 1. Introduction .............................................................................................. 1 1.1. What is Aging? .................................................................................. 1 1.2. Subjectivity and Vocabulary ............................................................ 1 1.3. Why Suspect Mitochondria or Free Radicals? ................................ 2 1.4. Tests, Interventions and Consequences .......................................... 2 2. An Introduction to Mitochondria ............................................................ 5 2.1. The Evolutionary Origins of Mitochondria .................................... 5 2.2. Mitochondrial Location and Structure ........................................... 7 2.3. Mitochondrial Function ................................................................. 10 2.4. Mitochondrial DNA, or mtDNA ................................................... 20 3. An Introduction to Free Radicals ........................................................... 35 3.1. Another Terminological Apology: “Pairing” of Electrons ........... 35 3.2. What Do LECs Do?......................................................................... 36 3.3. Where Do LECs Come from In Vivo? ........................................... 36 3.4. The LECs and Related Molecules Relevant to MiFRA ................. 37 3.5. LEC-Related Reactions Relevant to MiFRA .................................. 38 3.6. Fenton Chemistry ........................................................................... 41 3.7. Chains and Branches ...................................................................... 41 3.8. Downstream Products—A Virtually Infinite Variety ................... 44 3.9. Fatty Acid Double Bonds: Fluidity but Oxidisability ................... 44 4. An Introduction to Lipid Metabolism ................................................... 47 4.1. The Major Fat-Related Molecules in Cells: Structural Roles ....... 47 4.2. Synthesis and Transport of Fatty Acids and Cholesterol.............. 50 4.3. Good and Bad LDL ......................................................................... 51 5. A Descriptive Introduction to Human Aging ........................................ 53 5.1. Atherosclerosis ................................................................................ 53 5.2. Cancer ............................................................................................. 54 5.3. Disorganization of Connective Tissue: Skin, Artery, Eye, Cartilage .................................................................................. 55 5.4. Blindness ......................................................................................... 57 5.5. Other Macroscopic Changes .......................................................... 58 5.6. Feedback, Turnover and Oxidative Stress ..................................... 58 5.7. An Interim Conclusion: The Overinterpretable Pleiotropy of Human Aging ............................................................................. 60 6. History of the Mitochondrial Free Radical Theory of Aging, 1954-1995 ..................................................................................... 65 6.1. Precursors of the Mitochondrial Free Radical Theory ................. 65 6.2. The First Mechanistic Idea ............................................................. 65 6.3. Suppressiveness ............................................................................... 66 6.4. Mitochondria as Free Radical Victims .......................................... 66 6.5. Comparisons with Other Species ................................................... 68 6.6. Amplification of Mutant mtDNA; Demise of the Vicious Cycle Theory ................................................................................... 74
7. The Status of Gerontological Theory in 1995 ........................................ 85 7.1. What Is a “Theory of Aging”? ........................................................ 85 7.2. What Causes What? ........................................................................ 86 7.3. The Two Big Mechanistic Gaps in MiFRA’95 ............................... 87 7.4. Some Other Theories and Their Difficulties ................................. 87 8. The Search for How Mutant mtDNA Is Amplified ............................... 91 8.1. Does Deleted—Shorter—mtDNA Replicate Faster? .................... 91 8.2. Do Perinuclear Mitochondria Trigger Their Own Replication? ................................................................. 91 8.3. A Clue From Yeast .......................................................................... 92 8.4. Proton Leak: Boon or Bane? .......................................................... 92 8.5. Less Degradation, Not More Replication ...................................... 94 8.6. Division as Autonomous Repair? .................................................. 96 9. The Search for How So Few Anaerobic Cells Cause So Much Oxidative Stress ..................................................................................... 101 9.1. How Few? ...................................................................................... 101 9.2. The Creation of mtDNA-Less Human Cell Lines....................... 102 9.3. The Plasma Membrane Oxidoreductase ..................................... 104 9.4. Getting the Most ATP Without Oxygen ..................................... 104 9.5. PMOR: The Solution, or the Problem? ....................................... 107 9.6. Systemic Consequences: The "Reductive Hotspot" Hypothesis .................................................................................... 107 9.7. Alternative Pathways .................................................................... 110 10. Frequently-Asked Questions ................................................................ 115 10.1. Why is Carl Lewis Still Alive? ................................................... 115 10.2. Why Haven’t We Evolved Our Mitochondrial DNA Away? ........................................................................................ 115 10.3. How Does the Germ Line Avoid mtDNA Decay?................... 119 10.4. Why Aren’t Dietary Antioxidants More Beneficial? ............... 121 10.5. Why Hasn’t SOS Been Tested in Flies or Worms? .................. 122 10.6. How Can Mutant Mitochondria Survive, Let Alone Out-Compete Working Ones? ................................................. 122 10.7. Why Doesn’t the Polyploidy of Mitochondria Protect Them? .......................................................................... 125 10.8. What About Mitochondrial Fusion? ....................................... 125 10.9. Why Doesn’t the Body Just Let (or Make) Affected Cells Die? ................................................................................... 129 10.10. What About In Situ Membrane Repair? ................................. 129 10.11. How Can SOS Explain mtDNA Depletion? ............................ 130 10.12. Why Isn’t Longevity Mainly Maternally Inherited?................ 131 10.13. Why Don’t Plasma Antioxidants Totally Prevent LDL Oxidation? ................................................................................ 132 10.14. Why Doesn’t Low Plasma LDL Retard Aging? ....................... 133 10.15. Isn't This "Reductive Hotspot" Business All Rather Far-Fetched? .............................................................................. 133
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CONTENTS<br />
1. Introduction .............................................................................................. 1<br />
1.1. What is <strong>Aging</strong>? .................................................................................. 1<br />
1.2. Subjectivity and Vocabulary ............................................................ 1<br />
1.3. Why Suspect Mitochondria or <strong>Free</strong> <strong>Radical</strong>s? ................................ 2<br />
1.4. Tests, Interventions and Consequences .......................................... 2<br />
2. An Introduction to Mitochondria ............................................................ 5<br />
2.1. <strong>The</strong> Evolutionary Origins <strong>of</strong> Mitochondria .................................... 5<br />
2.2. <strong>Mitochondrial</strong> Location and Structure ........................................... 7<br />
2.3. <strong>Mitochondrial</strong> Function ................................................................. 10<br />
2.4. <strong>Mitochondrial</strong> DNA, or mtDNA ................................................... 20<br />
3. An Introduction to <strong>Free</strong> <strong>Radical</strong>s ........................................................... 35<br />
3.1. Another Terminological Apology: “Pairing” <strong>of</strong> Electrons ........... 35<br />
3.2. What Do LECs Do?......................................................................... 36<br />
3.3. Where Do LECs Come from In Vivo? ........................................... 36<br />
3.4. <strong>The</strong> LECs and Related Molecules Relevant to MiFRA ................. 37<br />
3.5. LEC-Related Reactions Relevant to MiFRA .................................. 38<br />
3.6. Fenton Chemistry ........................................................................... 41<br />
3.7. Chains and Branches ...................................................................... 41<br />
3.8. Downstream Products—A Virtually Infinite Variety ................... 44<br />
3.9. Fatty Acid Double Bonds: Fluidity but Oxidisability ................... 44<br />
4. An Introduction to Lipid Metabolism ................................................... 47<br />
4.1. <strong>The</strong> Major Fat-Related Molecules in Cells: Structural Roles ....... 47<br />
4.2. Synthesis and Transport <strong>of</strong> Fatty Acids and Cholesterol.............. 50<br />
4.3. Good and Bad LDL ......................................................................... 51<br />
5. A Descriptive Introduction to Human <strong>Aging</strong> ........................................ 53<br />
5.1. Atherosclerosis ................................................................................ 53<br />
5.2. Cancer ............................................................................................. 54<br />
5.3. Disorganization <strong>of</strong> Connective Tissue: Skin, Artery,<br />
Eye, Cartilage .................................................................................. 55<br />
5.4. Blindness ......................................................................................... 57<br />
5.5. Other Macroscopic Changes .......................................................... 58<br />
5.6. Feedback, Turnover and Oxidative Stress ..................................... 58<br />
5.7. An Interim Conclusion: <strong>The</strong> Overinterpretable Pleiotropy<br />
<strong>of</strong> Human <strong>Aging</strong> ............................................................................. 60<br />
6. History <strong>of</strong> the <strong>Mitochondrial</strong> <strong>Free</strong> <strong>Radical</strong> <strong>The</strong>ory <strong>of</strong><br />
<strong>Aging</strong>, 1954-1995 ..................................................................................... 65<br />
6.1. Precursors <strong>of</strong> the <strong>Mitochondrial</strong> <strong>Free</strong> <strong>Radical</strong> <strong>The</strong>ory ................. 65<br />
6.2. <strong>The</strong> First Mechanistic Idea ............................................................. 65<br />
6.3. Suppressiveness ............................................................................... 66<br />
6.4. Mitochondria as <strong>Free</strong> <strong>Radical</strong> Victims .......................................... 66<br />
6.5. Comparisons with Other Species ................................................... 68<br />
6.6. Amplification <strong>of</strong> Mutant mtDNA; Demise <strong>of</strong> the Vicious<br />
Cycle <strong>The</strong>ory ................................................................................... 74