study. 40 The method may also be modified to monitor superoxide released outside the mitochondria, which would be particularly useful to investigate cell lines derived from Cu, Zn- SOD-deficient animal models. 41,42 Long-term application of chemical cytometry to quantify superoxide levels may find wide applications to the fields of toxicology, aging, and oxidativestress related disease. 4,43,44 ACKNOWLEDGMENT The National Institutes of Health supported this work through Grant R01-AG-20866. We thank Dr. Margaret Donoghue for providing comments on the manuscript. SUPPORTING INFORMATION AVAILABLE Additional information as noted in text. This material is available free of charge via the Internet at http://pubs.acs.org. (40) Xu, X.; Thompson, L. V.; Navratil, M.; Arriaga, E. A. Anal. Chem. 2010, 82, 4570–4576. (41) Reaume, A. G.; Elliott, J. L.; Hoffman, E. K.; Kowall, N. W.; Ferrante, R. J.; Siwek, D. F.; Wilcox, H. M.; Flood, D. G.; Beal, M. F.; Brown, R. H., Jr.; Received for review June 7, 2010. Accepted July 4, 2010. Scott, R. W.; Snider, W. D. Nat. Genet. 1996, 13, 43. AC101509D (42) Veerareddy, S.; Cooke, C. L.; Baker, P. N.; Davidge, S. T. Am. J. Physiol. Heart Circ. Physiol. 2004, 287, H40. (43) Thompson, L. V. Exp. Gerontol. 2009, 44, 106. (44) Amacher, D. E. Curr. Med. Chem. 2005, 12, 1829. 6750 <strong>Analytical</strong> <strong>Chemistry</strong>, Vol. 82, No. 16, August 15, 2010
Anal. Chem. 2010, 82, 6751–6755 Resolving Disulfide Structural Isoforms of IgG2 Monoclonal Antibodies by Ion Mobility Mass Spectrometry Dhanashri Bagal, † John F. Valliere-Douglass, ‡ Alain Balland,* ,‡ and Paul D. Schnier* ,† Molecular Structure, Amgen, Thousand Oaks, California 91320, and Process and Product Development, Amgen, Seattle, Washington 98119 Recombinant monoclonal antibodies are an important class of therapeutic agents that have found widespread use for the treatment of many human diseases. Here, we have examined the utility of ion mobility mass spectrometry (IMMS) for the rapid characterization of disulfide variants in intact IgG2 monoclonal antibodies. It is shown that IMMS reveals 2 to 3 gas-phase conformer populations for IgG2s. In contrast, a single gas-phase conformer is revealed using IMMS for both an IgG1 antibody and a Cys- 232 f Ser mutant IgG2, both of which are homogeneous with respect to disulfide bonding. This provides strong evidence that the observed IgG2 gas-phase conformers are related to disulfide bond heterogeneity. Additionally, IMMS analysis of redox enriched disulfide isoforms allows assignment of the mobility peaks to established disulfide bonding patterns. These data clearly illustrate how IMMS can be used to quickly provide information on the higher order structure of antibody therapeutics. The overall structure of the immunoglobulin G (IgG) family is organized in 12 subdomains, each closed by an intrachain disulfide bond. 1 Heavy chain (HC) and light chain (LC) are connected by interchain disulfide bonds to form a covalent complex of the form (HC-LC)2. IgG1, IgG2, and IgG4 isotypes share greater than 90% sequence homology in their constant domains but differ significantly in the hinge region. IgG1 and IgG4 hinge core sequences are very similar with two cysteines on each heavy chain involved in interheavy chain connection, whereas IgG2 is unique in presenting four cysteine residues in the hinge region, notably two consecutive residues, Cys-232 and Cys-233 (amino acid numbering of Kabat et al.), 2 that have no equivalent in any other immunoglobulin subclass. Researchers at Amgen recently reported that these residues confer distinctive structural features to the human IgG2 isotype resulting in the formation of disulfide-related structural isoforms. 3,4 Three distinct structural isoforms (IgG2-A, IgG2-B, and IgG2-A/B) 3,4 specific to human IgG2s were revealed by chro- * To whom correspondence should be addressed. E-mail: ballanda@amgen.com (A.B.); pschnier@amgen.com (P.D.S.). † Molecular Structure. ‡ Process and Product Development. (1) Padlan, E. A. Adv. Protein Chem. 1996, 49, 57–133. (2) Kabat, E. A.; Wu, T. T.; Perry, H. M.; Gottesman, K. S.; Foeller, C. Sequences of Proteins of Immunological Interest, 5th ed.; U.S. Public Health Service, NIH: Washington, DC., 1991. matographic and electrophoretic methods including capillary electrophoresis with sodium dodecyl sulfate (CE-SDS), 3,5 reversedphase high performance liquid chromatography (RP-HPLC), 4 and cation exchange chromatography (CEX). 3,6 IgG2-A corresponds to the classical model with independent Fab and Fc domains connected by the hinge (Figure 1a). 7 IgG2-B is a symmetrical form with HC and LC covalently linked to the hinge by disulfide bridges (Figure 1b). IgG2-A/B is an asymmetrical form intermediate between A and B. Detailed analysis of each IgG2 kappa structural isoforms showed that the different interchain disulfide bond arrangements involved only four residues: the cysteine in constant region one of the heavy chain (CH1), Cys-127 (Kabat numbering), the cysteine at the C-terminus of the light chain, Cys-214, and two cysteines in the upper hinge region, specific to the IgG2 subclass, Cys-232 and Cys-233. The precise cysteine connectivity of each structural form was established by partial reductionalkylation and mass spectrometry (MS) 8 and Edman sequencing MS. 9 Modeling of the IgG2 sequence based on the three-dimensional antibody structure places the four cysteines in close spatial proximity, supporting the concept that a variable arrangement of these residues could generate IgG2 structural isoforms. Two specific cysteine-to-serine mutants were designed at positions 232 and 233 to disrupt potential disulfide rearrangements. 10 These mutants both exhibited no significant difference in expression and potency characteristics when compared to wild type IgG2 but proved structurally homogeneous with respect to the disulfide bonding of the IgG2-A type. 10 (3) Wypych, J.; Li, M.; Guo, A.; Zhang, Z.; Martinez, T.; Allen, M. J.; Fodor, S.; Kelner, D. N.; Flynn, G. C.; Liu, Y. D.; Bondarenko, P. V.; Ricci, M. S.; Dillon, T. M.; Balland, A. J. Biol. Chem. 2008, 283, 16194–16205. (4) Dillon, T. M.; Ricci, M. S.; Vezina, C.; Flynn, G. C.; Liu, Y. D.; Rehder, D. S.; Plant, M.; Henkle, B.; Li, Y.; Deechongkit, S.; Varnum, B.; Wypych, J.; Balland, A.; Bondarenko, P. V. J. Biol. Chem. 2008, 283, 16206–16215. (5) Guo, A.; Han, M.; Martinez, T.; Ketchem, R. R.; Novick, S.; Jochheim, C.; Balland, A. Electrophoresis 2008, 29, 2550–2556. (6) Zhang, Y.; G. A.; Novick, S.; Jochheim, C.; Boyce, J. M.; Gerhart, M.; Qin, X.; Gombotz, W. I. Bioprocessing J. 2003, (Nov-Dec), 37–43. (7) Milstein, C.; Frangione, B. Biochem. J. 1971, 121, 217–225. (8) Martinez, T.; Guo, A.; Allen, M. J.; Han, M.; Pace, D.; Jones, J.; Gillespie, R.; Ketchem, R. R.; Zhang, Y.; Balland, A. Biochemistry 2008, 47, 7496– 7508. (9) Zhang, B.; Harder, A. G.; Connelly, H. M.; Maheu, L. L.; Cockrill, S. L. Anal. Chem. 2009, 82, 1090–1099. (10) Allen, M. J.; Guo, A.; Martinez, T.; Han, M.; Flynn, G. C.; Wypych, J.; Liu, Y. D.; Shen, W. D.; Dillon, T. M.; Vezina, C.; Balland, A. Biochemistry 2009, 48, 3755–3766. 10.1021/ac1013139 © 2010 American <strong>Chemical</strong> Society 6751 <strong>Analytical</strong> <strong>Chemistry</strong>, Vol. 82, No. 16, August 15, 2010 Published on Web 07/21/2010
- Page 1 and 2: Anal. Chem. 2010, 82, 6745-6750 Let
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from the specimen and enclosed in a
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Figure 4. (A) IRMS mass-44 chromato
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Table 3. Ambient Measurement Result
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Anal. Chem. 2010, 82, 6807-6813 Dir
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Polymerase (1 U per sample). Reacti
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of which was constant for all ampli
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analytically useful signals at less
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carbon black and RP-C18 for the ext
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solution in an equal volume, and 1
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Table 2. Concentrations and Ratios
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Anal. Chem. 2010, 82, 6821-6829 Mac
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mg/mL protein, followed by separati
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Figure 2. Productivity of SEQUST an
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Figure 4. High-resolution MS/MS spe
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Figure 6. Characterization of PSMs
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containing T-T mismatches. 23 Based
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Figure 1. Extinction spectra of sol
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Figure 3. (A) The value of Ex650 nm
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Figure 5. Extinction spectra and co
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wished to explore the dehydration o
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constant medium for separation; we
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Figure 2. Standards of (Pi)n, n ) 1
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Figure 5. Quantitative calibration
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Anal. Chem. 2010, 82, 6847-6853 Met
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Figure 1. 226 Ra spectrum by liquid
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Table 1. Counting Properties and De
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Table 3. Analysis of 226 Ra in Sedi
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mercial microarray scanner and fabr
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Figure 2. Optical transmission meas
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Figure 5. Volcano plots detailing t
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data as well. The 41 genes in Table
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corresponding compound if its chemi
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Figure 1. Schematic illustration of
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Table 1. Absolute Quantification Re
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ment. Therefore, the long-time drea
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Figure 1. Chemically actuated micro
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Figure 2. Influence of a surfactant
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Figure 5. Device to eject and mix s
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Anal. Chem. 2010, 82, 6877-6886 Imm
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NaCl, phosphate buffer saline (PBS)
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Figure 2. Product ion mass spectra
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-70 °C resolved the problem, givin
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Table 1. Intraday Precision and Acc
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Anal. Chem. 2010, 82, 6887-6894 Fer
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Figure 1. Infrared spectra of (A) u
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Figure 3. Cyclic voltammograms obta
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Figure 6. Calculated charge from ch
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Anal. Chem. 2010, 82, 6895-6903 Ele
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Table 1. Chemical Structure, pKa Va
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pH with a tilted baseline (Figure 1
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Table 2. Linearity and Detection Li
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ascorbic acid (AA), uric acid (UA),
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the multielement capabilities, the
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RESULTS AND DISCUSSION Sulfur Detec
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Table 2. Molecular Properties and C
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Anal. Chem. 2010, 82, 6911-6918 Dir
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dilution and hybridization buffer.
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solution under appropriate incubati
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Figure 4. Standardization curve for
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Anal. Chem. 2010, 82, 6919-6925 Ele
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the ×10 objective, to have a large
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Figure 2. With a suitable removal o
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the NB signal in a much better foot
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Scheme 1. Reactions of Selenium Rea
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Figure 2. (a) ESI-MS spectrum showi
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Figure 4. (a) ESI-MS spectrum showi
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Anal. Chem. 2010, 82, 6933-6939 Dif
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trode 28 by a finite element using
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Figure 4. Comparison between simula
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Figure 6. Comparison between simula
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educed in the vicinity of double bo
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Figure 2. Normalized product ion ab
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Figure 4. EID (a) and IRMPD (b) of
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Anal. Chem. 2010, 82, 6947-6957 Ide
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Figure 1. Schematic flowchart showi
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difference, ppm compound Table 1. I
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isoforms, its successful use, in th
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Figure 5. Extracted ion current ESI
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m/z 1172.935 was observed for Ser14
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linked products via affinity tags.
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Scheme 2. Fragmentation Mechanism o
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Figure 1. (A) ESI-LTQ-CID-MS 2 prod
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Figure 3. (A) ESI-LTQ-CID-MS 2 prod
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Figure 5. (A) MALDI-TOF/TOF product
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Anal. Chem. 2010, 82, 6969-6975 Ana
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Figure 3. Equilibrium response as a
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Figure 6. The average measured resp
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for the fill time, and we find that
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nucleotide tails. 3-5 Thus, the amo
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allow the use of higher aptamer con
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quent ligation of the aptamers afte
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Anal. Chem. 2010, 82, 6983-6990 Imp
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Figure 2. Configuration editor wind
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Figure 4. Dependencies between volu
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Since the time for liquid expulsion
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Anal. Chem. 2010, 82, 6991-6999 Int
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Figure 1. Representation of the Car
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Table 2. Capillary Electrophoresis
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Figure 4. (A) Typical raw electroph
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field. DNA profiles were delivered
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Another approach to handle this lim
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(principal components, PCs) in whic
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Figure 5. Relevant score plots and
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CONCLUSIONS In this paper we have i
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electroactive-species loaded liposo
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Figure 2. Qdot-based FLFTS response
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Figure 6. Fluorescence imaging of Q
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Anal. Chem. 2010, 82, 7015-7020 Sel
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Table 1. Effect of 1 D-LC Condition
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Figure 3. Peak-production rate vers
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Anal. Chem. 2010, 82, 7021-7026 Cel
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luciferase (T7 control vector) was
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Figure 3. Inhibitory effects of luc
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Anal. Chem. 2010, 82, 7027-7034 Pat
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Electrochemistry. Electrochemical m
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Figure 2. SEM images of Au substrat
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Table 3. Film Thickness Measurement
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Anal. Chem. 2010, 82, 7035-7043 Qua
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Figure 1. (A) FL spectra of BSPOTPE
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Figure 4. (A) Variation in the FL i
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Figure 6. (A) FL spectra of BSPOTPE
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Scheme 1. Proposed Mechanism for Fl
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one or more drawbacks including poo
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Figure 2. Free fluorophores do not
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Anal. Chem. 2010, 82, 7049-7052 Dev
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Figure 2. Comparative analysis of d