Highlights of the Didymellaceae - Studies in Mycology

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AveSkAMp et al. Fig. 2. (Continued). have glabrous pycnidia and, like Ph. betae, aseptate conidia, hence their link to Phoma section Phoma. Absence of an ostiole is only recorded in Ph. glaucispora (De Gruyter et al. 1998). Pleospora is linked to the anamorph genus Stemphylium (Simmons 1969), Alternaria and Dendryphion (Von Arx 1981). The pluriform nature of the Pleospora anamorphs strongly contrasts with the relatively uniform morphology of the teleomorphic structures (Holm 1962, Kodsueb et al. 2006, Inderbitzin et al. 2009). The polyphyletic nature of Pleospora has been hypothesised by Holm (1962) and Berbee (1996), but only recently have molecular studies confirmed its taxonomic complexity (Dong et al. 1998, Kodsueb et al. 2006, Inderbitzin et al. 2009). 20 0.62 - 0.98 83 1.00 56 0.94 83 0.98 78 1.00 66 0.90 52 1.00 100 1.00 99 Phoma section Phoma Phoma section Heterospora Phoma section Paraphoma Phoma section Peyronellaea Phoma section Phyllostictioides Phoma section Sclerophomella Phoma section Plenodomus Phoma section Macrospora Phoma section Pilosa Unknown/ non-Phoma -species CBS 172.34 ‘Dothiorella ulmi’ 0.96 86 1.00 CBS 100167 CBS 101202 Boeremia exigua var. populi 96 CBS 101196 CBS 443.94 Boeremia exigua var. heteromorpha CBS 119730 Boeremia exigua var. tarda 0.96 93 0.82 84 CBS 114.28 CBS 116.76 Boeremia exigua var. linicola 0.95 66 CBS 101211 Boeremia exigua var. viburni CBS 100354 Boeremia exigua var. viburni CBS 109183 Boeremia exigua var. coffeae CBS 101207 CBS 101197 CBS 101213 CBS 431.74 CBS 101150 Boeremia exigua var. exigua, Boeremia exigua var. pseudolilacis var. nov., Boeremia exigua var. forsythiae 0.91 73 0.97 98 CBS 126.93 CBS 261 261.92 92 Boeremia strasserii 0.67 - 0.58 - 1.00 - 0.93 CBS 109.79 100 Boeremia crinicola CBS 118.93 CBS 569.79 Boeremia lilacis 0.98 1.00 100 CBS 100353 Boeremia noackiana CBS 101203 0.65 - 0.90 99 74 0.98 CBS 101194 80 Boeremia diversispora CBS 102.80 CBS 109175 CBS 760.73 Boeremia telephii 1.00 98 CBS 109170 CBS 629.68 Boeremia sambuci-nigrae 1.00 100 1.00 100 CBS 366.91 CBS 367 367.91 91 Boeremia hedericola 0.99 99 CBS 109176 CBS 341.67 1.00 CBS 378.67 100 CBS 109172 Boeremia foveata Boeremia lycopersici CBS 454.64 Didymella vitalbina 0.89 1.00 100 CBS 246.60 PD 77/1028 Epicoccum pimprinum 75 1.00 100 CBS 125.82 CBS 173.73 Epicoccum nigrum 1.00 100 CBS 179.80 CBS 627.68 Epicoccum sorghi 1.00 100 CBS 105.80 CBS 390.93 Phoma huancayensis CBS 284.93 CBS 558.81 Phoma plurivora CBS 104.80 Phoma henningsii CBS 186.83 Phoma draconis CBS 120105 Phoma brasiliensis sp. nov. CBS 193.82 Phoma crystallifera Group N: Boeremia Group M: Epicoccum Group L Clade 8, Didymellaceae: The major cluster observed in the generic phylogeny is the top clade in Fig. 1, which represents the Didymellaceae clade. This clade is well supported (BPP = 0.99, RBS = 94 %), but with the loci used, a high level of basal polytomy is recorded within the clade. The ancestral species in this clade are the Graminae-pathogens, Ascochyta hordei and Ph. paspali. The latter species has been considered to be an indigenous pathogen of grasses in Australia and New Zealand (Johnston 1981, Boerema et al. 2004), but based on sequence comparisons this species is probably also present in Europe (Wirsel et al. 2001, C. Gueidan pers. comm.). Clade 8 comprises most Phoma species, including CBS 615.75, the representative strain of Ph. herbarum (Boerema et al.
00.62 62 - 0.54 - 0.59 - 0.94 - Fig. 2. (Continued). 0.61 - 0.94 - 0.78 - 0.88 - 0.70 - www.studiesinmycology.org 1.00 1.00 98 CBS 105.96 CBS 106.96 Stagonosporopsis actaeae 1.00 92 0.98 98 CBS 631.68 CBS 135.96 Stagonosporopsis dennisii 1.00 92 1.00 99 1.00 100 CBS 379.91 CBS 384.68 Stagonosporopsis trachelii CBS 634.92 Stagonosporopsis oculo-hominis 96 1.00 CBS 500 500.63 63 Stagonosporopsis ligulicola ligulicola 100 CBS 137.96 var. ligulicola 1.00 1.00 100 95 CBS 109180 Stagonosporopsis rudbeckiae CBS 102636 Stagonosporopsis artemisiicola CBS 425.90 Stagonosporopsis ligulicola 0.86 50 S1 PD 85/259 CBS 248.90 var. inoxydabilis 0.98 100 CBS 282.76 Stagonosporopsis caricae 0.93 73 1.00 100 PD 06/03082531 1.00 CBS 109171 100 CBS 133.96 Stagonosporopsis cucurbitacearum 1.00 100 CBS 109182 PD 95/6189 Stagonosporopsis heliopsidis 1.00 100 S2 1.00 CBS 101.80 100 Stagonosporopsis andigena CBS 269.80 1.00 CBS 713.85 Stagonosporopsis crystalliniformis 100 CBS 771.85 0.85 1.00 75 55 0.99 84 S3 1.00 CBS 104.42 100 CBS 572.85 CBS 178.25 1.00 CBS 101494 98 CBS 375.84 Stagonosporopsis hortensis Stagonosporopsis astragali Stagonosporopsis lupini 1.00 98 S4 1.00 CBS 562.81 100 Stagonosporopsis loticola CBS 628.97 1.00 CBS 320.90 Stagonosporopsis dorenboschii 100 CBS 426.90 0.95 62S5 1.00 CBS 176.93 100 CBS 177.93 1.00 CBS 273.92 100 CBS 329.67 Stagonosporopsis ajacis Stagonosporopsis valerianellae 0.98 0.98 1.00 98 98 CBS 506.91 CBS 497.91 CBS 436.75 Phoma costarricensis Phoma tropica - 1.00 100 CBS 268.93 PD 90/2011 Phoma piperis 1.00 100 CBS 315.83 CBS 325.82 Phoma minor sp. nov. 1.00 99 1.00 100 CBS 124.93 CBS 479 479.93 93 CBS 131.93 Phoma zantedeschiae Phoma labilis CBS 123.93 Phoma eupatorii CBS 148.94 Chaetasbolisia erysiphoides CBS 100409 Phoma commelinicicola 1.00 100 CBS 135.93 CBS 874.97 Phoma sylvatica 1.00 97 1.00 90 1.00 100 CBS 114.93 CBS 127.93 CBS 113.20 CBS 116.93 CBS 110.79 Phoma novae-verbascicola nom. nov. Phoma poolensis CBS 507.91 Phoma dictamnicola 1.00 100 PD 83/48 CBS 368.65 CBS 274.60 Phoma multirostrata CBS 267.92 Phoma pereupyrena CBS 252.92 Phoma insulana 1.00 100 PD 84/512 CBS 100190 Didymella macropodii 0.54 CBS 378.73 1.00 50 CBS 133.93 100 CBS 162.78 Phoma destructiva var. destructiva Phoma destructiva var. diversispora Phoma section Phoma Phoma section Heterospora Phoma section Paraphoma Phoma section Peyronellaea Phoma section Phyllostictioides Phoma section Sclerophomella Phoma section Plenodomus Phoma section Macrospora Phoma section Pilosa Unknown/ non-Phoma -species Phoma And relAted pleoSporAleAn generA Group S: Stagonosporopsis Group R Group Q Group P Group O 21
Page 1 and 2: available online at www.studiesinmy
Page 3 and 4: considered to be a repository for d
Page 5 and 6: to assure complete coverage of the
Page 7 and 8: Table 2. (Continued). www.studiesin
Page 15 and 16: Bayes ________ RaXML Phoma section
Page 17 and 18: Gruyter et al. 2009). Especially th
Page 19: 0.81 - 0.76 - Fig. 2. (Continued).
Page 23 and 24: Group A - outgroup and basal lineag
Page 25 and 26: Phoma polemonii Cooke, Grevillea 13
Page 27 and 28: (65-)95-200(-220) μm with a single
Page 29 and 30: www.studiesinmycology.org Phoma And
Page 31 and 32: calmodulin genes did not reveal any
Page 33 and 34: Peyronellaea obtusa (Fuckel) Aveska
Page 41 and 42: Basionym: Sphaeronaema multirostrat
Page 45 and 46: Stagonosporopsis astragali (Cooke &
Page 51 and 52: Notes: This species was isolated tw
Page 53 and 54: Boerema et al. (2004) linked Phoma
Page 55 and 56: number of species, belonging to eit
Page 57 and 58: Chen W, Seifert KA, Lévesque CA (2
Page 59 and 60: Rai MK (2000). The genus Phoma (Ide

Highlights of the Didymellaceae - Studies in Mycology

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