Highlights of the Didymellaceae - Studies in Mycology

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AveSkAMp et al. Phoma section Phoma Phoma section Heterospora Phoma section Paraphoma Phoma section Peyronellaea Phoma section Phyllostictioides Phoma section Sclerophomella Phoma section Plenodomus Phoma section Macrospora Phoma section Pilosa Unknown/ non-Phoma -species 18 1.00 79 0.63 0.1 subsitutions / site 0.54 - 0.87 63 0.99 68 0.96 - 1.00 100 1.00 CBS 123394 99 Phoma infossa CBS 123395 CBS 125.93 Phoma arachidis-hypogaeae CBS 633.92 Phoma fungicola nom. nov. CBS 381 381.91 91 Phoma anigozanthi CBS 377.67 Phoma gossypiicola 0.64 - 1.00 56 0.63 - 1.00 100 0.80 - 1.00 81 CBS 317.83 Leptosphaerulina australis CBS 939.69 CBS 275.59 Leptosphaerulina arachidicola CBS 213.55 Leptosphaerulina americana CBS 235.58 Leptosphaerulina trifolii 0.87 CBS 526.71 Macroventuria wentii 1.00 73 98 CBS 502.72 CBS 525.71 Macroventuria anomochaeta 0.97 1.00 100 CBS 102.66 CBS 108.79 Phoma clematidina 0.73 84 1.00 100 PD 95/1958 CBS 507.63 Phoma clematidis-rectae clematidis rectae 94 0.66 63 1.00 CBS 107.96 CBS 108.96 Phoma aquilegiicola 100 0.58 - CBS 112.96 CBS 114.96 Phoma glaucii 1.00 100 CBS 187.83 CBS 258.92 Didymella adianticola 1.00 100 CBS 372.91 CBS 130.69 Phoma putaminum 0.87 CBS 122.93 Phoma selaginellicola - CBS 442.83 0.53 - 1.00 100 CBS 432.71 CBS 233.77 1.00 CBS 374.91 100 CBS 527.66 Microsphaeropsis olivacea Phoma eupyrena 1.00 0.88 CBS 524.77 1.00 - PD 83/492 100 CBS 649.71 Didymella fabae 100 CBS 126.54 CBS 122785 Didymella pisi 1.00 1.00 100 CBS 383.67 CBS 627.97 Phoma aubrietiae 100 1.00 100 CBS 117.93 CBS 503.75 Phoma nebulosa 1.00 100 CBS 112.53 CBS 404 404.65 65 CBS 316.90 Phoma medicaginis var. medicaginis Phoma medicaginis var. macrospora 0.50 - 1.00 100 CBS 116.96 Phoma nigripycnidia CBS 100311 CBS 268.92 Phoma complanata 1.00 77 1.00 CBS 534.65 100 Didymella rabiei CBS 581.83A CBS 629.97 Phoma herbicola 1.00 100 CBS 991.95 CBS 654.77 Phoma omnivirens 1.00 100 CBS 357.84 CBS 124515 Phoma bulgarica sp.nov. 1.00 100 CBS 876.97 PD 2000/1379 Phoma versabilis 1.00 98 CBS 502.91 CBS 615.75 Phoma herbarum 0.97 67 1.00 1.00 100 1.00 CBS 383.68 100 PD 84/407 Phoma xanthina CBS 109181 Phoma polemonii CBS 138.25 Diplodina coloradensis 0.96 - 100 1.00 CBS 121.75 1.00 93 Didymella urticicola PD 73/570 100 CBS 234.37 Didymella cannabis 1.00 89 1.00 100 CBS 102634 Didymella applanata CBS 205.63 CBS 102635 Didymella catariae 0.92 - 1.00 100 CBS 220.85 Phoma humicola CBS 259.92 Phoma matteucciicola CBS 298.89 CBS 419.92 Phoma saxea sp. nov. 1.00 100 1.00 CBS 560.81 100 CBS 561.81 CBS 544.74 Ascochyta hordei var. hordei Phoma paspali Group F Group E: Leptosphaerulina Group D: Macroventuria Group C Group B Group A: Outgroup and Basal lineages Fig. 2. Fifty percent majority rule consensus tree from a BI analysis of LSU, ITS and TUB sequences of Didymellaceae (n = 274). At the nodes the BI Posterior Probabilities are presented above the branch, and bootstrap percentages of the analysis are given below the branch. Branches that were less than 50 % supported in the ML analyses are indicated with a hyphen. The bar indicates the number of substitutions per site. The tree is rooted with Ascochyta hordei var. hordei (CBS 544.74) and Phoma paspali (CBS 560.81 & CBS 561.81).
0.81 - 0.76 - Fig. 2. (Continued). www.studiesinmycology.org 1.00 99 CBS 318.90 CBS 567.97 CBS 100580 Peyronellaea pinodella 0.60 56 CBS 531.66 CBS 285.49 CBS 235.55 1.00 95 CBS 525.77 CBS 159.78 Peyronellaea pinodes 1.00 99 CBS 525.77a CBS 103.25 Peyronellaea lethalis 0.63 1.00 94 0.85 72 1.00 100 CBS 315.90 CBS 333.75 CBS 132.96 1.00 CBS 391.93 100 CBS 381.96 CBS 377.93 Peyronellaea arachidicola Peyronellaea obtusa, Peyronellaea protuberans, Peyronellaea alectorolophi - 0.81 CBS 444.81 PD 77/919 Peyronellaea australis nom. nov. 100 11.00 00 1.00 100 99 CBS 464 464.97 97 CBS 528.66 CBS 269.93 Peyronellaea aurea PPeyronellaea ll glomerata l 0.91 - 0.66 54 1.00 CBS 123380 100 CBS 123398 1.00 CBS 281.83 100 LEV 15292 Peyronellaea coffeae-arabicae Peyronellaea sancta 1.00 100 CBS 377.91 CBS 508.91 Peyronellaea eucalyptica 1.00 75 PD 92/1460 CBS 251.92 Peyronellaea curtissii 0.67 - CBS 463.69 Peyronellaea musae CBS 185.85 1.00 100 PD 82/1059 Peyronellaea y americana 0.51 - 0.96 74 CBS 568.97 1.00 CBS 110.92 100 PD 78/1090 Peyronellaea subglomerata 1.00 58 0.54 68 0.99 54 CBS 588.69 Peyronellaea zeae-maydis 1.00 CBS 302.79 100 CBS 626.68 CBS 109.92 Peyronellaea gardeniae 1.00 100 CBS 630.97 Peyronellaea calorpreferens 1.00 CBS 875.97 79 1.00 100 CBS 285.76 CBS 286.76 CBS 388.80 Peyronellaea pomorum var. cyanea CBS 539.66 Peyronellaea pomorum var. pomorum Peyronellaea pomorum var. circinata 0.92 62 1.00 100 CBS 360.84 CBS 363.91 Peyronellaea anserina 1.00 CBS 109942 Phoma boeremae 96 CBS 346.82 Phoma dimorpha sp. nov. 0.90 - 1.00 100 CBS 223.69 CBS 482.95 CBS 109173 CBS 529.66 Phoma macrostoma var. macrostoma Phoma macrostoma var. incolorata 0.99 - 1.00 100 CBS 500.91 CBS 523.73 Phoma viburnicola 0.99 CBS 179.97 Phoma acetosellae 60 CBS 183.55 Didymella y exigua g 0.60 1.00 100 1.00 CBS 714.85 100 PD 94/886 CBS 160.78 Phoma senecionis Phoma bellidis - 1.00 100 CBS 109179 CBS 229.79 Phoma digitalis 0.96 CBS 249.92 1.00 99 1.00 95 CBS 250.92 96 CBS 305.79A 1.00 CBS 124516 100 CBS 124517 Phoma subherbarum Phoma pedeiae sp. nov. 1.00 CBS 109177 Phoma rhei 100 CBS 124513 Phoma dactylidis sp. nov. 11.00 00 100 CBS 448 448.83 83 PD 84/109 Phoma calidophila 1.00 100 CBS 347.82 CBS 124514 Phoma longicolla sp. nov. 1.00 100 CBS 105.95 CBS 491.90 Phoma microchlamydospora 1.00 CBS 379.93 100 CBS 877.97 Phoma aliena 1.00 100 CBS 358.71 PD 79/74 Phoma negriana 1.00 100 CBS 128.93 CBS 129.93 Phoma chenopodiicola Phoma And relAted pleoSporAleAn generA Group K: Peyronellaea Group J Group I Group H Group G Phoma section Phoma Phoma section Heterospora Phoma section Paraphoma Phoma section Peyronellaea Phoma section Phyllostictioides Phoma section Sclerophomella Phoma section Plenodomus Phoma section Macrospora Phoma section Pilosa Unknown/ non-Phoma -species 19
Page 1 and 2: available online at www.studiesinmy
Page 3 and 4: considered to be a repository for d
Page 5 and 6: to assure complete coverage of the
Page 7 and 8: Table 2. (Continued). www.studiesin
Page 15 and 16: Bayes ________ RaXML Phoma section
Page 17: Gruyter et al. 2009). Especially th
Page 21 and 22: 00.62 62 - 0.54 - 0.59 - 0.94 - Fig
Page 23 and 24: Group A - outgroup and basal lineag
Page 25 and 26: Phoma polemonii Cooke, Grevillea 13
Page 27 and 28: (65-)95-200(-220) μm with a single
Page 29 and 30: www.studiesinmycology.org Phoma And
Page 31 and 32: calmodulin genes did not reveal any
Page 33 and 34: Peyronellaea obtusa (Fuckel) Aveska
Page 41 and 42: Basionym: Sphaeronaema multirostrat
Page 45 and 46: Stagonosporopsis astragali (Cooke &
Page 51 and 52: Notes: This species was isolated tw
Page 53 and 54: Boerema et al. (2004) linked Phoma
Page 55 and 56: number of species, belonging to eit
Page 57 and 58: Chen W, Seifert KA, Lévesque CA (2
Page 59 and 60: Rai MK (2000). The genus Phoma (Ide

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