IN INOCULANTS Nodulaid - 17th International Nitrogen Fixation ...
IN INOCULANTS Nodulaid - 17th International Nitrogen Fixation ... IN INOCULANTS Nodulaid - 17th International Nitrogen Fixation ...
17 th International Congress on Nitrogen Fixation Fremantle, Western Australia 27 November – 1 December 2011 Session Details: Tuesday 29 November 2011 Concurrent Session 4 – Applications of New Technologies 1100 - 1230 Authors: Antoine Huyghe, Nadia Bakkou, Maged Saad & Xavier Perret University of Geneva, Sciences III, Department of Botany and Plant Biology, Microbiology Unit, 30 quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland. Presentation Title: Profiling the symbiotic responses of Sinorhizobium fredii strain NGR234 with RNA-seq Presentation Time: 1120 - 1140 Sinorhizobium fredii strain NGR234 establishes proficient nitrogen-fixing symbioses with more than 150 plants that belong to distant genera and form nodules of either determinate (DN) or indeterminate (IDN) types (Pueppke and Broughton, 1999). Genome as well as functional analyses confirmed that genes of NGR234 required for nodule formation, infection of nodule cells and nitrogen (N2) fixation were not restricted to the 536 kb « symbiotic » plasmid pNGR234a as was previously thought. To identify within the 6.9 Mb genome of NGR234 (Schmeisser et al. 2009) loci susceptible to contribute to broad host-range symbioses, we combined proteomic and transcriptomic datasets. In particular, RNA-seq was used to compare the transcriptomes of cells grown in free-living conditions (in the presence or absence of daidzein) or found inside nitrogen-fixing nodules of DN or IDN types. In parallel, an in vitro mutagenesis system designed to generate non-polar mutations as well as facilitate the functional analysis of NifA-regulated loci was successfully tested in NGR234 (Fumeaux et al. 2011). These combined approaches lead to the identification of new loci whose expression profiles were confirmed by qRT-PCR and were either modulated by flavonoids or bacteroid-specific. Amongst the novel flavonoid-inducible genes, the expression of a chromosomal locus was shown to be linked to a nod-box regulatory sequence but independent of the NodD1-TtsI-SyrM2-NodD2 regulatory cascade that controls nodulation and T3SS genes of pNGR234a (Kobayashi et al. 2004). The current status of the proteomic and transcriptomic approaches will be presented, with an emphasis on the distinct networks which control the flavonoid-dependent or bacteroid-specific expression of genes in the promiscous strain NGR234. 38 2011
17 th International Congress on Nitrogen Fixation Fremantle, Western Australia 27 November – 1 December 2011 Session Details: Tuesday 29 November 2011 Concurrent Session 4 – Applications of New Technologies 1100 - 1230 Authors: David Chiasson 1 , Patrick Loughlin 2 , Elena Fedorova 3 , Ton Bisseling 3 and Brent N. Kaiser 1 1 School of Agriculture, Food, and Wine. The University of Adelaide, Urrbrae, SA, 5064, Australia. 2 School of Biological Sciences, University of Sydney, Sydney New South Wales 2006, Australia. 3 Laboratory of Molecular Biology, Department of Plant Sciences, Wageningen University, Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands. Presentation Title: The use of heterologous expression systems to characterise the function of the soybean transcription factor GmSAT1 Presentation Time: 1140 - 1200 GmSAT1 (Glycine max Symbiotic Ammonium Transporter) was originally isolated in a screen for complementation of ammonium transport in the yeast mutant strain 26972c (Kaiser et al 1998). GmSAT1 has been localized to both the peribacteroid membrane (PBM) and the nucleus in soybean nodules by Western blotting and immunogold labeling. Recent work has revealed that GmSAT1 is critical for nodule organogenesis. Silencing GmSAT1 by RNA interference results in a reduced number of nodules, and a Fix- phenotype. Although the in planta function of GmSAT1 has not yet been elucidated, the use of heterologous systems has given us insight into a very dynamic protein. We have expressed GmSAT1 in yeast and onion epidermal peels. Expression in yeast has allowed us to confirm that GmSAT1 is indeed a transcription factor. GmSAT1 directly activates the transcription of a novel yeast ammonium channel (termed AMF) and binds the AMF promoter in vitro. Expression of GFP:GmSAT1 in yeast shows localization to punctate vesicles, the plasma membrane, and the nucleus. In soybean we have recently discovered new transcripts from the GmSAT1 locus. One transcript is an alternatively-spliced version of the original clone, and encodes for a nodule-enhanced N-terminal signal peptide. We have bombarded onion epidermal peels with various GFP-fusions of GmSAT1. These experiments have allowed us to determine the membrane-associated region of GmSAT1 and assign a localization function to the signal peptide. Lastly, we have made GFP fusions of both GmSAT1 orthologues from Medicago truncatula (MtSAT1 and MtSAT2). Confocal microscopy studies show that, similar to GmSAT1 in yeast and onions, MtSAT1 and MtSAT2 are localized to punctate vesicles and the nucleus. We conclude that GmSAT1 is a membrane-associated transcription factor. Kaiser, BN, Finnegan, PM, Tyerman, SD, Whitehead, LF, Bergersen, FJ, Day, DA, and Udvardi, MK (1998). Characterization of an Ammonium Transport Protein from the Peribacteroid Membrane of Soybean Nodules. Science 281:1202-1205. 39 2011
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17 th <strong>International</strong> Congress on <strong>Nitrogen</strong> <strong>Fixation</strong><br />
Fremantle, Western Australia<br />
27 November – 1 December 2011<br />
Session Details: Tuesday 29 November 2011<br />
Concurrent Session 4 – Applications of New Technologies<br />
1100 - 1230<br />
Authors: David Chiasson 1 , Patrick Loughlin 2 , Elena Fedorova 3 , Ton Bisseling 3 and Brent N.<br />
Kaiser 1<br />
1 School of Agriculture, Food, and Wine. The University of Adelaide, Urrbrae, SA, 5064,<br />
Australia.<br />
2 School of Biological Sciences, University of Sydney, Sydney New South Wales 2006,<br />
Australia.<br />
3 Laboratory of Molecular Biology, Department of Plant Sciences, Wageningen University,<br />
Dreijenlaan 3, 6703 HA, Wageningen, The Netherlands.<br />
Presentation Title: The use of heterologous expression systems to characterise the function of the soybean<br />
transcription factor GmSAT1<br />
Presentation Time: 1140 - 1200<br />
GmSAT1 (Glycine max Symbiotic Ammonium Transporter) was originally isolated in a screen for<br />
complementation of ammonium transport in the yeast mutant strain 26972c (Kaiser et al 1998). GmSAT1 has<br />
been localized to both the peribacteroid membrane (PBM) and the nucleus in soybean nodules by Western<br />
blotting and immunogold labeling. Recent work has revealed that GmSAT1 is critical for nodule organogenesis.<br />
Silencing GmSAT1 by RNA interference results in a reduced number of nodules, and a Fix- phenotype.<br />
Although the in planta function of GmSAT1 has not yet been elucidated, the use of heterologous systems has<br />
given us insight into a very dynamic protein. We have expressed GmSAT1 in yeast and onion epidermal peels.<br />
Expression in yeast has allowed us to confirm that GmSAT1 is indeed a transcription factor. GmSAT1 directly<br />
activates the transcription of a novel yeast ammonium channel (termed AMF) and binds the AMF promoter in<br />
vitro. Expression of GFP:GmSAT1 in yeast shows localization to punctate vesicles, the plasma membrane, and<br />
the nucleus. In soybean we have recently discovered new transcripts from the GmSAT1 locus. One transcript is<br />
an alternatively-spliced version of the original clone, and encodes for a nodule-enhanced N-terminal signal<br />
peptide. We have bombarded onion epidermal peels with various GFP-fusions of GmSAT1. These experiments<br />
have allowed us to determine the membrane-associated region of GmSAT1 and assign a localization function to<br />
the signal peptide. Lastly, we have made GFP fusions of both GmSAT1 orthologues from Medicago truncatula<br />
(MtSAT1 and MtSAT2). Confocal microscopy studies show that, similar to GmSAT1 in yeast and onions,<br />
MtSAT1 and MtSAT2 are localized to punctate vesicles and the nucleus. We conclude that GmSAT1 is a<br />
membrane-associated transcription factor.<br />
Kaiser, BN, Finnegan, PM, Tyerman, SD, Whitehead, LF, Bergersen, FJ, Day, DA, and Udvardi, MK (1998).<br />
Characterization of an Ammonium Transport Protein from the Peribacteroid Membrane of Soybean Nodules.<br />
Science 281:1202-1205.<br />
39<br />
2011