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possibility that unexpected results are not necessarily incorrect, but may reflect<br />

undiscovered phenomena.<br />

Calmodulin, calcium free (closed) form<br />

Morph ID: f964492-8654 PDB ID: 1CFD<br />

HAG hinges (residues 80,81)<br />

Calmodulin, like the closely related Troponin C, belongs to a superfamily of homologous<br />

proteins that bind calcium through similar domains. Calmodulin is found in all<br />

eukaryotic cells, mediating various physiological processes. Despite the wide variety of<br />

organisms in which it is found, the sequence is surprisingly well conserved, In all known<br />

sequences, there are only seven amino acid substitutions, all conservative. Calmodulin<br />

contains four Ca 2+ binding EF hands, numbered I-IV, which induce significant<br />

conformational change, leading to its ability to interact with a wide variety of enzymes.<br />

It shares helices A through H with Troponin C (see description of that protein for more<br />

details), but not helix N.<br />

The long central helix, from residues 65 to 92, has a cluster of negatively charged<br />

residues in the central portion, with mostly hydrophobic residues on each end. The<br />

hydrogen bond distances along the helix have variations at four- to five-residue intervals.<br />

The backbone dihedral angles also show deviations from ideal α-helical geometry,<br />

reflecting partial unwinding and apparent strains. The periodic backbone carbonyl<br />

oxygen to N-H hydrogen bonds are longer than usual in this region, Residues 76 to 82<br />

203

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