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amaxa<br />

› amaxa news 02<br />

news<br />

› Nucle<strong>of</strong>ector technology and RNAi –<br />

application note, ‘essentials’, data<br />

› amaxa and QI<strong>AG</strong>EN ® cooperation –<br />

joined forces in gene silencing<br />

› New: nucle<strong>of</strong>ection <strong>of</strong> cardiomyocytes<br />

and natural killer <strong>cells</strong><br />

› New: nucle<strong>of</strong>ection <strong>of</strong> <strong>neural</strong> <strong>stem</strong><br />

<strong>cells</strong> and astrocytes<br />

gene transfer begins here<br />

02


Integrated Solutions — Gene Silencing<br />

Silence your genes in both<br />

adherent and suspension<br />

<strong>cells</strong>!<br />

New<br />

HUVEC <strong>cells</strong> transfected with siRNA<br />

using RNAiFect <strong>Transfection</strong> Reagent<br />

Jurkat <strong>cells</strong> transfected with siRNA using<br />

Nucle<strong>of</strong>ector technology<br />

Use our new partnership for gene silencing in adherent and<br />

suspension <strong>cells</strong>!<br />

QI<strong>AG</strong>EN ® and amaxa have joined forces to <strong>of</strong>fer you solutions<br />

for RNAi from design to delivery. QI<strong>AG</strong>EN’s siRNA service<br />

includes high-purity siRNA synthesis and an advanced design<br />

algorithm. RNAiFect <strong>Transfection</strong> Reagent provides effective<br />

transfection <strong>of</strong> adherent <strong>cells</strong>. amaxa’s Nucle<strong>of</strong>ector technology<br />

ensures success for transfection <strong>of</strong> suspension <strong>cells</strong>.<br />

■ Effective gene silencing — combining our expertise in<br />

siRNA design, synthesis, and delivery<br />

■ Efficient siRNA delivery — typically 95% transfection<br />

efficiency in adherent <strong>cells</strong> and 99% in suspension <strong>cells</strong><br />

■ Tested for many cell types — including HeLa, HEK293,<br />

NIH/3T3, CHO, C6, <strong>AG</strong>S, Jurkat, HL-60, K562, U937,<br />

THP-1, HUVEC, MEF, and primary human T <strong>cells</strong><br />

Find out more at<br />

www.qiagen.com/siRNA/TransfectAllCells !<br />

Trademarks: QI<strong>AG</strong>EN ® , RNAiFect (QI<strong>AG</strong>EN Group), Nucle<strong>of</strong>ector (amaxa GmbH),<br />

siRNA technology licensed to QI<strong>AG</strong>EN is covered by various patent applications,<br />

owned by the Massachusetts Institute <strong>of</strong> Technology, Cambridge, MA, USA and others.<br />

GSA1003AMAXA 10/2003 © 2003 QI<strong>AG</strong>EN, all rights reserved.<br />

WWW.QI<strong>AG</strong>EN.COM<br />

Editorial<br />

We are proud to introduce the second issue <strong>of</strong> ‘amaxa news’. Your<br />

feedback to our first issue was overwhelming and was a valuable<br />

resource to further improve this newsletter. Thank you again for<br />

your comments and your positive feedback!<br />

At present, RNAi is one <strong>of</strong> the most exciting topics in the scientific<br />

community and also <strong>of</strong> major importance to amaxa (pp. 6-9,<br />

12-15). The Nucle<strong>of</strong>ector technology addresses one <strong>of</strong> the key<br />

bottlenecks in RNAi – highly efficient delivery into hard-to-transfect<br />

cell lines and primary <strong>cells</strong>. In addition, amaxa has joined forces<br />

with QI<strong>AG</strong>EN ® to provide you with an integrated solution for siRNA<br />

design and delivery comprising QI<strong>AG</strong>EN’s siRNA design service<br />

and amaxa’s Nucle<strong>of</strong>ector technology. Read more about your<br />

benefits from this co-operation in this issue <strong>of</strong> ‘amaxa news’ (p. 6).<br />

Anything else besides RNAi? Quite a lot. ‘amaxa news’ will also<br />

give an update on our latest R&D developments. Find out more<br />

about our new Nucle<strong>of</strong>ector Kits for cardiomyocytes, natural<br />

killer <strong>cells</strong> (p. 4), astrocytes, <strong>neural</strong> <strong>stem</strong> <strong>cells</strong> (p. 5), mouse<br />

embryonic <strong>stem</strong> <strong>cells</strong> and mouse embryonic fibroblasts (pp. 10-11).<br />

And there is still more to learn … we wish you an interesting read.<br />

Dr. Gregor Siebenkotten Rainer Christine<br />

CSO CEO


[k]<br />

q<br />

d<br />

New products<br />

New products<br />

amaxa insights<br />

Application note<br />

New products<br />

Tips and hints<br />

Product update<br />

Backround information<br />

amaxa insights<br />

Highlighted paper<br />

amaxa insights<br />

amaxa worldwide<br />

amaxa worldwide<br />

FAQ<br />

Ordering information<br />

To order products contact our<br />

Scientific Support Team (see back<br />

cover for contact details).<br />

Supplementary information<br />

To order supplementary information<br />

complete the reply card attached in<br />

the center <strong>of</strong> this newsletter.<br />

amaxa web information<br />

To instantly find more detailed<br />

information on certain subjects visit<br />

the indicated website.<br />

› Table <strong>of</strong> content<br />

4 Nucle<strong>of</strong>ector Kits for transfection <strong>of</strong> human natural killer <strong>cells</strong><br />

and rat cardiomyocytes<br />

5 <strong>Transfection</strong> <strong>of</strong> <strong>neural</strong> <strong>stem</strong> <strong>cells</strong> (NSC) and astrocytes from<br />

mouse and rat<br />

6 amaxa and QI<strong>AG</strong>EN ® have joined forces in gene silencing<br />

7 RNAi in suspension <strong>cells</strong> using amaxa’s Nucle<strong>of</strong>ector<br />

technology together with QI<strong>AG</strong>EN ® ’s HPP Grade siRNA duplexes<br />

Elke Lorbach, Dietmar Lenz, Andrea Klaes, Katharina Hein, Bodo Ortmann, Tatjana Males,<br />

Hanns-Martin Schmidt, Peter Hahn, Wolfgang Bielke and Günter Kraus<br />

10 Nucle<strong>of</strong>ection <strong>of</strong> mouse embryonic fibroblasts (MEF) and<br />

mouse embryonic <strong>stem</strong> <strong>cells</strong><br />

12 Take a short cut for your RNAi experiments – the ‘essentials’ about<br />

Nucle<strong>of</strong>ector technology and RNAi<br />

14 Nucle<strong>of</strong>ector technology and RNAi – examples <strong>of</strong> successful<br />

knockdown provided by Nucle<strong>of</strong>ector users<br />

16 Basics about nucle<strong>of</strong>ection and the easiest way to transfect<br />

your cell line<br />

18 Fly amaxa competition winners announced<br />

Highlighted paper: Messi et al. (2003)<br />

19 amaxa user forum<br />

20 WAKO Pure Chemicals - amaxa’s competent partner in Japan<br />

21 Meet amaxa at your bench<br />

amaxa’s distributors around the world<br />

22 Frequently asked questions on Nucle<strong>of</strong>ector technology in<br />

neurobiology and immunology<br />

Editor<br />

Wolfgang Kintzel<br />

Editorial board<br />

Bernd Eschweiler, Katrin Höck,<br />

Katja Thieke, Michael Nix<br />

Production coordinator<br />

Benno Limberg<br />

amaxa news is published by<br />

amaxa GmbH<br />

Nattermannallee 1<br />

50829 Koeln<br />

Germany<br />

amaxa_news@amaxa.com<br />

Tel: +49(0)221-99199-0<br />

Fax:+49(0)221-99199-111<br />

› page 3 › www.amaxa.com<br />

amaxa’s patent pending technologies<br />

and information is the express and<br />

proprietary information <strong>of</strong> amaxa GmbH.<br />

amaxa, Nucle<strong>of</strong>ection, Nucle<strong>of</strong>ector,<br />

“gene transfer begins here” are all<br />

trademarks <strong>of</strong> amaxa GmbH.<br />

Please note that to date amaxa’s<br />

Nucle<strong>of</strong>ector technology is intended for<br />

research use or investigational use only.<br />

Design<br />

vierviertel – Agentur für<br />

Kommunikationsdesign GmbH<br />

info@vierviertel.com<br />

© 2003 amaxa. All rights reserved.<br />

Printed in Germany.


› New products<br />

new<br />

Nucle<strong>of</strong>ector Kits for transfection<br />

<strong>of</strong> human natural killer<br />

<strong>cells</strong> and rat cardiomyocytes<br />

Nucle<strong>of</strong>ection <strong>of</strong> primary human natural killer <strong>cells</strong><br />

Cancer and immunology research was frequently hampered due<br />

to the inability to transfect primary NK <strong>cells</strong> non-virally. With the<br />

Human NK Cell Nucle<strong>of</strong>ector Kit a major breakthrough has been<br />

accomplished circumventing the use <strong>of</strong> rather artificial cell lines.<br />

Due to the major obstacles encountered during NK cell transfection<br />

so far an efficiency <strong>of</strong> up to 20% can be a major advancement<br />

for your research.<br />

natural<br />

killer <strong>cells</strong><br />

› first non-viral transfection technology for primary NK <strong>cells</strong><br />

› transfection efficiencies <strong>of</strong> up to 20%<br />

› viability post nucle<strong>of</strong>ection: 50-60%<br />

Nucle<strong>of</strong>ection <strong>of</strong> primary neonatal rat cardiomyocytes<br />

Cardiovascular research has to struggle with two constraints: the<br />

lack <strong>of</strong> appropriate cell line models and an efficient transfection<br />

method for primary cardiomyocytes. Nucle<strong>of</strong>ection <strong>of</strong> rat cardiomyocytes<br />

will help to overcome both limitations.<br />

› first efficient non-viral transfection technology for primary<br />

neonatal rat cardiomyocytes<br />

› reproducible transfection efficiencies up to 40%<br />

› viability post nucle<strong>of</strong>ection: 50-60%<br />

cardiomyocytes<br />

plasmid encoding DsRed. Two days post nucle<strong>of</strong>ection, the <strong>cells</strong><br />

[k] Ordering information<br />

Human NK Cell Nucle<strong>of</strong>ector Kit Cat. No.: VPA-1005 d<br />

Rat Cardiomyocyte Nucle<strong>of</strong>ector Kit Cat. No.: VPE-1002<br />

› page 4 › amaxa news 02<br />

SSC<br />

NK <strong>cells</strong> -DNA NK <strong>cells</strong> +DNA<br />

A B<br />

eGFP<br />

0.5%<br />

SSC<br />

eGFP<br />

Nucle<strong>of</strong>ection <strong>of</strong> neonatal rat cardiomyocytes<br />

Primary neonatal rat cardiomyocytes were nucle<strong>of</strong>ected with a<br />

were analyzed by fluorescence microscopy. Fig A shows DsRed<br />

expressing <strong>cells</strong>. Cardiomyocytes stained with FITC-labeled<br />

tropomyosin antibody (a fibrous protein that is part <strong>of</strong> the muscle<br />

fibers) are shown in fig. B. Fig. C is an overlay. (Photographs<br />

courtesy <strong>of</strong> F. Engel and M. Keating, Cardiology Department,<br />

Childrens’ Hospital, Havard Medical School, Boston, MA, USA)<br />

amaxa web information<br />

Cancer www.amaxa.com/cancer<br />

Immunology www.amaxa.com/immunology<br />

Cardiology www.amaxa.com/cardio<br />

16.9%<br />

Nucle<strong>of</strong>ection <strong>of</strong> primary human NK <strong>cells</strong><br />

Primary human natural killer <strong>cells</strong> were nucle<strong>of</strong>ected with a<br />

plasmid encoding eGFP protein. Cells were analyzed by flow<br />

cytometry 24 hours post nucle<strong>of</strong>ection. eGFP expression in<br />

natural killer <strong>cells</strong> is shown after nucle<strong>of</strong>ection without (A) and<br />

with plasmid DNA (B). (Courtesy <strong>of</strong> J. Sundbäck and K. Kärre,<br />

Karolinska Institute, Microbiology and Tumor Biology Center,<br />

Stockholm, Sweden)<br />

A<br />

C<br />

B


[k]<br />

% nucle<strong>of</strong>ected <strong>cells</strong><br />

› New products<br />

<strong>Transfection</strong> <strong>of</strong> <strong>neural</strong> <strong>stem</strong><br />

<strong>cells</strong> (NSC) and astrocytes from<br />

mouse and rat<br />

Recently amaxa introduced four new Nucle<strong>of</strong>ector Kits for the transfection <strong>of</strong> <strong>neural</strong> <strong>stem</strong> <strong>cells</strong> and astrocytes to<br />

further support your research in neurobiology. For the most important cell types in neurobiology Nucle<strong>of</strong>ector Kits<br />

are now available. These include kits for mouse, rat, and chicken neurons and for PC12 and C6 cell lines.<br />

(Coming soon: SH-SY5Y).<br />

Use the Nucle<strong>of</strong>ector for your neurobiology research:<br />

non-viral › first efficient non-viral method for <strong>neural</strong> and glial <strong>cells</strong><br />

high efficiencies › up to 70% transfection efficiency<br />

functionality › <strong>cells</strong> remain functional after nucle<strong>of</strong>ection<br />

long-term survival › up to three weeks survival<br />

no optimization › ready-to-use kits<br />

100<br />

90<br />

80<br />

70<br />

60<br />

50<br />

40<br />

30<br />

20<br />

10<br />

0<br />

new<br />

eGFP<br />

48h 24h 48h 24h<br />

mouse mouse rat rat<br />

NSC astrocytes astrocytes NSC<br />

Average transfection efficiencies for <strong>neural</strong> <strong>stem</strong> <strong>cells</strong> and<br />

astrocytes<br />

Mouse and rat NSC and astrocytes were transfected with a<br />

plasmid encoding the eGFP protein. <strong>Transfection</strong> efficiencies<br />

are given as % positive <strong>cells</strong>. Analysis was performed by<br />

fluorescence microscopy.<br />

Ordering information<br />

Mouse NSC Nucle<strong>of</strong>ector Kit Cat. No.: VPG-1004<br />

Rat NSC Nucle<strong>of</strong>ector Kit Cat. No.: VPG-1005<br />

Mouse Astrocyte Nucle<strong>of</strong>ector Kit Cat. No.: VPG-1006<br />

Rat Astrocyte Nucle<strong>of</strong>ector Kit Cat. No.: VPG-1007<br />

› page 5 › www.amaxa.com<br />

A<br />

Example for Nucle<strong>of</strong>ection <strong>of</strong> rat <strong>neural</strong> <strong>stem</strong> <strong>cells</strong> (NSC)<br />

Primary rat <strong>neural</strong> <strong>stem</strong> <strong>cells</strong> isolated from rat embryos (E14) were nucle<strong>of</strong>ected with<br />

a plasmid encoding the eGFP protein under the control <strong>of</strong> an EF1d promoter. After<br />

nucle<strong>of</strong>ection <strong>cells</strong> were cultured with bFGF for two days, then for five days without<br />

bFGF to differentiate NSC into neurons and astrocytes. Cells were analyzed by fluorescence<br />

microscopy two days (A) and seven days (B) post nucle<strong>of</strong>ection. (Photographs<br />

courtesy <strong>of</strong> Dr. S.H. Lee, College <strong>of</strong> Medicine, Dept. <strong>of</strong> Biochemistry, Hanyang<br />

University, Seoul, South Korea)<br />

q<br />

Supplementary information<br />

Neurobiology flyer – Nucle<strong>of</strong>ection in neurobiology<br />

WKB-1004<br />

B<br />

d amaxa web information www.amaxa.com/neurobiology


› amaxa insights<br />

amaxa and QI<strong>AG</strong>EN ® have<br />

joined forces in gene silencing<br />

RNAi provides a rapid, efficient and powerful tool in functional genomics drawing widespread attention to this field. Although<br />

RNAi has proven to be a powerful method for gene silencing some technical difficulties remain. QI<strong>AG</strong>EN and amaxa<br />

have joined forces to address the two key bottlenecks in RNAi-mediated gene silencing i.e. siRNA design and delivery.<br />

Take advantage <strong>of</strong> our partnership for siRNA<br />

design and delivery<br />

By combining QI<strong>AG</strong>EN’s knowledge <strong>of</strong> siRNA<br />

design and synthesis and amaxa’s know-how on<br />

efficient delivery, into virtually any cell, a com-<br />

› page 6 › amaxa news 02<br />

plete service for your gene silencing experiments is now available.<br />

QI<strong>AG</strong>EN and amaxa’s technical services provide an invaluable<br />

source <strong>of</strong> information for details on siRNA experiment set-up,<br />

siRNA design and transfection protocols for optimal delivery. Call<br />

today to discuss your experiment!<br />

siRNA design made easy with QI<strong>AG</strong>EN<br />

Optimal siRNA design › Use the convenient online QI<strong>AG</strong>EN siRNA Design Tool which<br />

uses the sensitive Smith-Waterman algorithm.<br />

High-purity, custom › HPP (High Performance Purity) Grade siRNA is > 90% pure.<br />

synthesized siRNA<br />

Minimal risk for gene silencing › 4-For-Silencing siRNA Duplexes are designed by QI<strong>AG</strong>EN<br />

scientists to target your gene <strong>of</strong> interest. QI<strong>AG</strong>EN guarantees<br />

70% knockdown or four additional duplexes will be provided.<br />

Efficient siRNA delivery with amaxa’s Nucle<strong>of</strong>ector technology<br />

Efficient delivery › Up to 99% siRNA transfection efficiency already proven in<br />

many different <strong>cells</strong>.<br />

Low cytotoxicity › Typically over 85% cell viability post nucle<strong>of</strong>ection regardless<br />

<strong>of</strong> siRNA amount transfected.<br />

No optimization › Ready-to-use kits and protocols for a wide range <strong>of</strong> cell types.<br />

Flexibility <strong>of</strong> RNAi application › One nucle<strong>of</strong>ection protocol for siRNA duplexes, vectors or<br />

in vitro transcribed siRNAs.<br />

d amaxa web information amaxa siRNA delivery www.amaxa.com/RNAi<br />

QI<strong>AG</strong>EN web information QI<strong>AG</strong>EN siRNA synthesis www.qiagen.com/siRNA<br />

contact information<br />

Australia QI<strong>AG</strong>EN Pty Ltd • Orders 03-9489-3666 • Fax 03-9489-3888 • Technical 1-800-243-066 › Canada QI<strong>AG</strong>EN Inc.<br />

Orders 800-572-9613 • Fax 800-713-5951 • Technical 800-DNA-PREP (800-362-7737) › France QI<strong>AG</strong>EN S.A. • Orders 01-60-920-920<br />

Fax 01-60-920-925 • Technical 01-60-920-930 › Germany QI<strong>AG</strong>EN GmbH • Orders 02103-29-12000 • Fax 02103-29-22000<br />

Technical 02103-29-12400 › Italy QI<strong>AG</strong>EN S.p.A. • Orders 02-33430411 • Fax 02-33430426 • Technical 02-33430414 › Japan<br />

QI<strong>AG</strong>EN K.K. • Telephone 03-5547-0811 • Fax 03-5547-0818 • Technical 03-5547-0811 › Switzerland QI<strong>AG</strong>EN <strong>AG</strong> • Orders 061-319-30-30<br />

Fax 061-319-30-33 • Technical 061-319-30-31 › United Kingdom QI<strong>AG</strong>EN Ltd. • Orders 01293-422-911 • Fax 01293-422-922<br />

Technical 01293-422-999 › USA QI<strong>AG</strong>EN Inc. • Orders 800-426-8157 • Fax 800-718-2056 • Technical 800-DNA-PREP (800-362-7737)


› Application note<br />

RNAi in suspension <strong>cells</strong> using amaxa’s<br />

Nucle<strong>of</strong>ector technology together with<br />

QI<strong>AG</strong>EN ® ’s HPP Grade siRNA duplexes<br />

Elke Lorbach*, Dietmar Lenz*, Andrea Klaes*, Katharina Hein*, Bodo Ortmann*, Tatjana Males*, Hanns-Martin Schmidt*,<br />

Peter Hahn**, Wolfgang Bielke**, Günter Kraus*<br />

Successful siRNA gene silencing depends on many different parameters such as mRNA turnover, mRNA abundance or<br />

half-life <strong>of</strong> the protein. Two important factors that can positively influence your siRNA experiment are the design <strong>of</strong><br />

the siRNA oligo and the efficient delivery <strong>of</strong> the siRNA. Here we show that HPP Grade siRNA from QI<strong>AG</strong>EN works well<br />

in combination with amaxa’s Nucle<strong>of</strong>ector technology and can be used to efficiently silence genes in various<br />

hard-to-transfect suspension cell lines as well as in primary <strong>cells</strong>.<br />

* amaxa GmbH,<br />

Köln, Germany<br />

** QI<strong>AG</strong>EN GmbH,<br />

Hilden, Germany<br />

Introduction<br />

RNA interference (RNAi) allows targeted<br />

knockdown <strong>of</strong> gene expression by introducing<br />

short interfering RNA (siRNA),<br />

homologous to the mRNA <strong>of</strong> the target<br />

gene, into <strong>cells</strong>. This method <strong>of</strong> gene<br />

silencing has become a valuable tool in<br />

functional genomics research, target<br />

validation, and gene-specific therapeutic<br />

research. Successful RNAi experiments<br />

are dependent on two major parameters:<br />

siRNA design and efficient delivery <strong>of</strong><br />

siRNA into <strong>cells</strong>.<br />

QI<strong>AG</strong>EN and amaxa have joined forces<br />

to provide a complete solution for RNAi<br />

that overcomes the problems associated<br />

with the key issues <strong>of</strong> siRNA design<br />

and delivery into mammalian <strong>cells</strong>.<br />

amaxa’s R&D team has demonstrated<br />

efficient siRNA delivery in suspension<br />

<strong>cells</strong> using QI<strong>AG</strong>EN’s HPP (High-Performance<br />

Purity) Grade siRNA and amaxa’s<br />

Nucle<strong>of</strong>ector technology.<br />

Figure 1: Easy siRNA design<br />

Screenshot <strong>of</strong> the QI<strong>AG</strong>EN siRNA Design<br />

Tool.<br />

In this study, efficient silencing <strong>of</strong> the<br />

housekeeping gene vimentin and the<br />

T cell receptor genes, CD2 and CD4, is<br />

shown in a variety <strong>of</strong> suspension cell lines,<br />

such as JURKAT, U937, THP-1, HL-60 and<br />

K562, as well as in non-dividing, unstimulated<br />

primary human T <strong>cells</strong>.<br />

siRNA design and synthesis<br />

The design and quality <strong>of</strong> an siRNA has<br />

a strong influence on the level and<br />

specificity <strong>of</strong> gene silencing. QI<strong>AG</strong>EN<br />

provides a siRNA Design Tool that uses<br />

state-<strong>of</strong>-the-art design criteria for easy<br />

design <strong>of</strong> siRNA (Figure 1).<br />

To further minimize the risk that a particular<br />

siRNA will not result in effective<br />

silencing, 4-For-Silencing siRNA Duplexes<br />

are available. These are a set <strong>of</strong> four HPP<br />

Grade siRNA duplexes, designed by<br />

QI<strong>AG</strong>EN scientists to target the gene <strong>of</strong><br />

choice. QI<strong>AG</strong>EN guarantees 70% mRNA<br />

knockdown with at least one <strong>of</strong> these<br />

1000<br />

900<br />

800<br />

700<br />

600<br />

500<br />

400<br />

300<br />

200<br />

Figure 2: High-purity siRNA for<br />

efficient gene silencing<br />

QI<strong>AG</strong>EN performs MALDI-TOF mass<br />

spectrometric analysis on every HPP<br />

Grade siRNA to confirm its integrity.<br />

› page 7 › www.amaxa.com<br />

Intensity<br />

100<br />

0<br />

5000 5500 6000 6500 7000 7500 8000 8500<br />

Mass/Charge<br />

siRNA duplexes, otherwise four additional<br />

siRNA duplexes are provided without<br />

additional cost.<br />

siRNAs directed against a range <strong>of</strong><br />

endogenous and reporter genes are<br />

available for developing and optimizing<br />

knockdown experiments. In addition,<br />

library sets are available for screening<br />

large numbers <strong>of</strong> genes. A regularly<br />

updated list can be found at<br />

www.qiagen.com/siRNA. QI<strong>AG</strong>EN’s HPP<br />

Grade siRNA is delivered >90% pure,<br />

eliminating the time and expense needed<br />

for HPLC or P<strong>AG</strong>E purification (Figure 2).<br />

siRNA delivery with Nucle<strong>of</strong>ector<br />

technology<br />

The Nucle<strong>of</strong>ector technology is a nonviral<br />

method for transfection <strong>of</strong> hard-totransfect<br />

cell lines and primary <strong>cells</strong>.<br />

It is based on two components, the<br />

Nucle<strong>of</strong>ector Device, which delivers<br />

unique electrical parameters, and the<br />

Nucle<strong>of</strong>ector Kits which contain cell-specific<br />

and optimized Nucle<strong>of</strong>ector Solutions.<br />

Ready-to-go protocols are available<br />

for many cell lines and primary cell types.<br />

The technology is suitable for the delivery<br />

<strong>of</strong> different substrates such as DNA, RNA<br />

or siRNA oligos without further optimization<br />

<strong>of</strong> the nucle<strong>of</strong>ection conditions.<br />

Suspension <strong>cells</strong> are difficult to transfect<br />

with conventional transfection<br />

methods, e.g. lipid-based reagents, with<br />

both plasmid DNA and siRNA oligos. In<br />

this study, we show that siRNA oligos<br />

can be efficiently delivered into many<br />

different suspension cell types with the<br />

Nucle<strong>of</strong>ector technology and that<br />

effective gene silencing can be achieved<br />

as shown by different methods,<br />

such as flow cytometry, western blot<br />

and quantitative RT-PCR.


› Application note<br />

JURKAT<br />

JURKAT<br />

HL-60<br />

HL-60<br />

K562<br />

K562<br />

THP-1<br />

THP-1<br />

Figure 3: Up to 99% siRNA delivery<br />

into suspension <strong>cells</strong><br />

Different suspension cell lines were<br />

nucle<strong>of</strong>ected using the appropriate<br />

Nucle<strong>of</strong>ector Kit and Rhodamine-labeled<br />

siRNA. Three hours post nucle<strong>of</strong>ection<br />

<strong>cells</strong> were analyzed by light and<br />

fluorescence microscopy.<br />

Gene silencing <strong>of</strong> various genes in<br />

suspension cell lines<br />

In order to determine the efficiency <strong>of</strong><br />

nucle<strong>of</strong>ection with siRNA duplexes,<br />

Rhodamine-labeled siRNA [QI<strong>AG</strong>EN] was<br />

transfected into different suspension<br />

cell types, such as JURKAT, HL-60, K562<br />

and THP-1 <strong>cells</strong> (Figure 3). Cells were<br />

analyzed by fluorescence microscopy<br />

and siRNA delivery was achieved with up<br />

to 99% efficiency.<br />

JURKAT, HL-60, K562, THP-1, U937 and<br />

primary human T <strong>cells</strong> were transfected<br />

with siRNA targeted to the housekeeping<br />

gene vimentin [QI<strong>AG</strong>EN, library<br />

siRNA; Cat.No. 1022055]. 24 and 48 hours<br />

after nucle<strong>of</strong>ection, silencing <strong>of</strong> vimentin<br />

gene expression was determined by<br />

quantitative, real-time RT-PCR (Figure 4).<br />

This experiment clearly demonstrates<br />

that expression <strong>of</strong> vimentin mRNA was<br />

downregulated with silencing effects<br />

between 70 and 90%. Furthermore, it<br />

% relative expression<br />

› page 8 › amaxa news 02<br />

100<br />

75<br />

50<br />

25<br />

0<br />

shows that this level <strong>of</strong> silencing is<br />

dependent on the cell type and time <strong>of</strong><br />

analysis due to different mRNA kinetics<br />

in different cell types.<br />

Knockdown <strong>of</strong> vimentin was also shown<br />

at protein level using western blot.<br />

JURKAT <strong>cells</strong> were transfected with<br />

three different concentrations <strong>of</strong> siRNA<br />

targeted to the vimentin gene (Figure 5).<br />

Already after 24 hours, the amount <strong>of</strong><br />

vimentin protein was clearly reduced<br />

using 0.7 µg siRNA. After 48 hours, the<br />

expression was further downregulated<br />

and with 0.7 µg the signal for vimentin<br />

was no longer detectable. These data<br />

indicate that silencing occurs also on the<br />

protein level and that the silencing<br />

effects are dose dependent.<br />

Two other suspension cell lines, the<br />

promyelocytic cell line HL-60 and the<br />

monocytic leukemia cell line THP-1, were<br />

used to show gene silencing <strong>of</strong> the CD4<br />

Figure 4: Gene silencing <strong>of</strong> vimentin in various suspension cell types<br />

Six different suspension cell types were transfected with 1.4 µg siRNA targeted to<br />

vimentin or with 1.4 µg control siRNA using the cell-type specific Nucle<strong>of</strong>ector<br />

protocols. After 24 and 48 hours total RNA was prepared from <strong>cells</strong> and used for quantitative<br />

real-time RT-PCR analysis. The expression level <strong>of</strong> vimentin mRNA was normalized<br />

to the expression <strong>of</strong> a housekeeping gene and quantified using a standard curve.<br />

kDa<br />

62<br />

Vimentin -<br />

47<br />

Actin -<br />

32<br />

Human T <strong>cells</strong> JURKAT THP-1 U937 K562 HL-60<br />

M<br />

Vimentin knockdown at protein level in JURKAT <strong>cells</strong><br />

24 hours 48 hours<br />

No siRNA +<br />

nucle<strong>of</strong>ection<br />

No nucle<strong>of</strong>ection<br />

1.4 µg siRNA<br />

0.14 µg<br />

0.7 µg<br />

Figure 5: Vimentin knockdown at protein level in JURKAT <strong>cells</strong><br />

JURKAT (ATCC) <strong>cells</strong> were transfected using Nucle<strong>of</strong>ector Kit V, program C-16 and<br />

0.14 µg, 0.7 µg, or 1.4 µg siRNA targeted to vimentin. Western blot analysis was carried<br />

out 24 and 48 hours post nucle<strong>of</strong>ection. Control lanes show samples with siRNA<br />

added without nucle<strong>of</strong>ection and with nucle<strong>of</strong>ection, but no addition <strong>of</strong> siRNA. The<br />

level <strong>of</strong> actin expression is shown for comparison. M=markers.<br />

1.4 µg<br />

M<br />

control siRNA<br />

vimentin siRNA (24h)<br />

vimentin siRNA (48h)<br />

No siRNA +<br />

nucle<strong>of</strong>ection<br />

0.14 µg<br />

0.7 µg<br />

1.4 µg<br />

M


q<br />

q<br />

› Application note<br />

counts<br />

For further<br />

info on siRNA<br />

design and<br />

synthesis go to<br />

www.qiagen.com<br />

/siRNA.<br />

For further info<br />

on siRNA<br />

delivery go to<br />

www.amaxa.com<br />

/RNAi.<br />

180<br />

150<br />

120<br />

90<br />

60<br />

30<br />

0<br />

100 101 102 103 104 0.14 µg CD4 siRNA<br />

10<br />

CD4-PE<br />

0 101 102 103 104 0.35 µg CD4 siRNA<br />

10<br />

CD4-PE<br />

0 101 102 103 104 0.7 µg CD4 siRNA<br />

10<br />

CD4-PE<br />

0 101 102 103 104 1.4 µg CD4 siRNA<br />

10<br />

CD4-PE<br />

0 101 102 103 104 1.0 µg CD4 siRNA<br />

CD4-PE<br />

Figure 6: Optimization <strong>of</strong> siRNA<br />

amounts in HL-60 <strong>cells</strong><br />

Five different amounts <strong>of</strong> siRNA duplexes<br />

targeting human CD4 were nucle<strong>of</strong>ected<br />

T cell receptor gene. Both cell types<br />

were transfected with siRNA targeted<br />

to the CD4 gene [QI<strong>AG</strong>EN, library<br />

siRNA; Cat.No. 1024675]. 48 hours after<br />

delivery <strong>of</strong> siRNA, downregulation <strong>of</strong><br />

CD4 was analyzed by flow cytometry<br />

(Figure 6 and 7). In HL-60 <strong>cells</strong> five<br />

different amounts <strong>of</strong> siRNA duplexes<br />

were transfected, and down regulation<br />

<strong>of</strong> CD4 expression occurred in a dosedependent<br />

manner. The most pronounced<br />

gene silencing effects were achieved<br />

with 1.4 µg siRNA (Figure 6). In THP-1<br />

<strong>cells</strong>, 1.4 µg siRNA was transfected and<br />

effective knockdown <strong>of</strong> CD4 expression<br />

was achieved (Figure 7). <strong>Transfection</strong><br />

<strong>of</strong> non-specific control siRNA duplexes<br />

did not influence the expression <strong>of</strong><br />

CD4.<br />

Successful gene silencing in primary<br />

human T <strong>cells</strong><br />

Efficient delivery <strong>of</strong> siRNA oligonucleotides<br />

into primary <strong>cells</strong> is the key<br />

180<br />

120<br />

60<br />

0<br />

counts 240<br />

Fig. 7<br />

10 0 10 1 10 2 10 3 10 4<br />

CD4-PE<br />

CD4 siRNA<br />

control siRNA<br />

no siRNA + nucle<strong>of</strong>ection<br />

Figure 7: CD4 Gene Silencing in<br />

THP-1 Cells<br />

THP-1 <strong>cells</strong> were transfected using<br />

Nucle<strong>of</strong>ector Kit V and program V-01<br />

and 1.4 µg siRNA targeted to CD4.<br />

48 hours after nucle<strong>of</strong>ection, <strong>cells</strong> were<br />

stained with anti-CD4-PE antibody and<br />

analyzed by flow cytometry. Controls<br />

included nucle<strong>of</strong>ection <strong>of</strong> 1.4 µg control<br />

siRNA and nucle<strong>of</strong>ection without siRNA.<br />

into HL-60 <strong>cells</strong> using Nucle<strong>of</strong>ector Kit<br />

V and program T-19. 48 hours after nucle<strong>of</strong>ection,<br />

<strong>cells</strong> were stained with anti-<br />

CD4-Phycoerythrin (PE) antibody and<br />

bottleneck before functional genomic<br />

studies can be performed under in vivolike<br />

conditions, such as those found in<br />

primary <strong>cells</strong>. Here we show that primary<br />

human T <strong>cells</strong> can be used for siRNA<br />

experiments with the Nucle<strong>of</strong>ector<br />

technology. Unstimulated human T <strong>cells</strong><br />

were transfected with siRNA targeted to<br />

the pan T cell receptor gene CD2 [siRNA<br />

sequence published by D. Unutmaz in<br />

amaxa application note: RNAi-mediated<br />

CD2 suppression in primary human T<br />

<strong>cells</strong>, WTB-1001]. 48 hours after nucle<strong>of</strong>ection,<br />

the downregulation <strong>of</strong> CD2<br />

expression could be shown by flow cytometry<br />

(Figure 8A). Expression <strong>of</strong> the<br />

CD4 receptor was not influenced as<br />

demonstrated by control staining with a<br />

PE-coupled CD4 antibody and flow cytometric<br />

analysis (Figure 8B). This clearly<br />

indicates that the gene silencing effect<br />

achieved was CD2 specific thus proving<br />

the Nucle<strong>of</strong>ector technology an efficient<br />

tool to transfect siRNA duplexes<br />

CD2 siRNA<br />

control siRNA<br />

no siRNA + nucle<strong>of</strong>ection<br />

Figure 8: High specificity <strong>of</strong> CD2<br />

siRNA in primary human T <strong>cells</strong><br />

Primary human T <strong>cells</strong> were nucle<strong>of</strong>ected<br />

with 1.4 µg siRNA targeted to CD2<br />

using the Human T Cell Nucle<strong>of</strong>ector<br />

Kit. Cells were stained with A anti<br />

› page 9 › www.amaxa.com<br />

counts<br />

200<br />

160<br />

120<br />

80<br />

40<br />

0<br />

Fig. 8A<br />

10 0 10 1 10 2 10 3 10 4<br />

CD2-FITC<br />

counts<br />

analyzed by flow cytometry. siRNA targeted<br />

against vimentin was used as control.<br />

CD4 siRNA control siRNA<br />

not only into suspension cell lines but<br />

also into primary suspension <strong>cells</strong>.<br />

Trademarks and disclaimers<br />

Nucle<strong>of</strong>ector,<br />

Nucle<strong>of</strong>ection (amaxa GmbH)<br />

QI<strong>AG</strong>EN ® (QI<strong>AG</strong>EN GmbH)<br />

siRNA technology licensed to QI<strong>AG</strong>EN is<br />

covered by various patent applications,<br />

owned by the Massachusetts Institute <strong>of</strong><br />

Technology, Cambridge, MA, USA and<br />

others.<br />

© 2003 amaxa, all rights reserved.<br />

QI<strong>AG</strong>EN guarantees that under appropriate<br />

transfection conditions at least<br />

one <strong>of</strong> the 4-For-Silencing siRNA Duplexes<br />

will reduce expression <strong>of</strong> your target<br />

mRNA by 70%. If not, QI<strong>AG</strong>EN will<br />

design and supply four additional siRNA<br />

duplexes against the same gene target<br />

at no additional charges.<br />

300<br />

240<br />

180<br />

120<br />

60<br />

0<br />

Fig. 8B<br />

10 0 10 1 10 2 10 3 10 4<br />

CD4-PE<br />

CD2-FITC antibody or B anti CD4-PE<br />

antibody, and analyzed by flow cytometry<br />

44 hours after transfection.<br />

Controls included nucle<strong>of</strong>ection with<br />

1.4 µg control siRNA and nucle<strong>of</strong>ection<br />

without siRNA.


Step 1<br />

Step 2<br />

› New products<br />

new<br />

Nucle<strong>of</strong>ection <strong>of</strong> mouse<br />

embryonic fibroblasts (MEF) and<br />

mouse embryonic <strong>stem</strong> <strong>cells</strong><br />

From cell differentiation to knock-out mice - amaxa introduces the new Nucle<strong>of</strong>ector Kits for transfection <strong>of</strong> mouse<br />

embryonic fibroblasts (MEF) and mouse embryonic <strong>stem</strong> <strong>cells</strong> (mouse ES <strong>cells</strong>). <strong>Transfection</strong> <strong>of</strong> MEF and mouse ES<br />

<strong>cells</strong> has broad research potential. Both kits will be important for research on cell differentiation, organogenesis, cellbased<br />

therapies, testing <strong>of</strong> new drugs, and gene function approaches like ‘loss-<strong>of</strong>-function’ and ‘gain-<strong>of</strong>-function’ studies.<br />

The MEF strategy –<br />

two simple steps for successful transfection<br />

MEF display significant phenotypic variations<br />

which depend on the mouse strain, the genetic<br />

background <strong>of</strong> the donor mice as well as the<br />

immortalization strategy. Due to these manifold<br />

properties, each MEF type may behave differently<br />

MEF Starter Kit<br />

The MEF Starter Nucle<strong>of</strong>ector Kit is designed to<br />

determine the ideal nucle<strong>of</strong>ection conditions for<br />

each MEF cell type. This is accomplished in a total<br />

MEF Kits 1 and 2<br />

After you have determined the appropriate MEF<br />

Nucle<strong>of</strong>ector Kit for your MEF strain you can<br />

› page 10 › amaxa news 02<br />

with respect to the optimal conditions for transfection.<br />

amaxa has addressed this by developing two MEF Nucle<strong>of</strong>ector<br />

Kits (1 and 2) and an easy-to-use MEF Starter Nucle<strong>of</strong>ector<br />

Kit. This strategy allows fast and individual nucle<strong>of</strong>ection <strong>of</strong> your<br />

MEF <strong>cells</strong>.<br />

non-viral transfection › efficient transfection <strong>of</strong> MEF <strong>cells</strong><br />

simple optimization strategy › two step optimization with MEF Nucle<strong>of</strong>ector Starter Kit<br />

applicable for virtually any MEF strain › taking into account the significant phenotypic strain variations<br />

high cell viability › viability from 60 - 80% (in strains tested so far)<br />

1 Solution MEF 1 MEF 2<br />

program 1 A-23 A-23<br />

program 2 T-20 T-20<br />

<strong>of</strong> just four reactions using MEF 1 and MEF 2 Nucle<strong>of</strong>ector Solution<br />

with two different programs. In the next step the appropriate MEF<br />

Nucle<strong>of</strong>ector Kit (1 or 2) can be used to perform the experiments.<br />

>>><br />

2<br />

3<br />

Order MEF 1 or 2 Nucle<strong>of</strong>ector TM Kit<br />

+<br />

>>><br />

nucle<strong>of</strong>ect the <strong>cells</strong> with MEF Nucle<strong>of</strong>ector Kit 1 or 2 and the<br />

appropriate program.


› New products<br />

60<br />

50<br />

40<br />

30<br />

20<br />

10<br />

0<br />

% transfection efficiency<br />

A B<br />

MEF<br />

protein. 24 hours post nucle<strong>of</strong>ection, the <strong>cells</strong> were analyzed<br />

Example for transfection efficiencies <strong>of</strong> primary MEF<br />

MEF were nucle<strong>of</strong>ected with a plasmid encoding the eGFP<br />

by fluorescent microscopy. (A) Mouse strain C57BL/6, spontaneously<br />

immortalized, passage 20, 1.5 µg eGFP (Courtesy<br />

<strong>of</strong> Dr. H. Hermanns and Pr<strong>of</strong>. P.H. Heinrich, University <strong>of</strong><br />

Aachen, Germany). (B) Mouse strain C57B6Jx129SV, SV40<br />

transformed, passage 4, 7 µg eGFP (Courtesy <strong>of</strong> Pr<strong>of</strong>. Saftig,<br />

University <strong>of</strong> Kiel, Germany)<br />

Research with mouse ES <strong>cells</strong> has already made<br />

its way to a sophisticated assay sy<strong>stem</strong> for<br />

studying diverse biological questions. Transgenic<br />

technology now allows to create mice with<br />

various genotypes and assess the consequences<br />

<strong>of</strong> this genotype in the context <strong>of</strong> developing and<br />

adult animals. <strong>Transfection</strong> <strong>of</strong> mouse ES <strong>cells</strong> will<br />

support the widespread adoption <strong>of</strong> the transgenic<br />

sy<strong>stem</strong> and the research on differentiation<br />

<strong>of</strong> mouse ES <strong>cells</strong>.<br />

Nucle<strong>of</strong>ector technology is an efficient alternative<br />

to standard electroporation to create<br />

[k] [k]<br />

Ordering information<br />

MEF Starter Nucle<strong>of</strong>ector Kit Cat. No.: VPD-1006<br />

MEF Nucle<strong>of</strong>ector Kit 1 Cat. No.: VPD-1004<br />

MEF Nucle<strong>of</strong>ector Kit 2 Cat. No.: VPD-1005<br />

› page 11 › www.amaxa.com<br />

Example for nucle<strong>of</strong>ection <strong>of</strong> primary MEF<br />

Spontaneously immortalized mouse embryonic fibroblasts (strain C57B6Jx129SV)<br />

were nucle<strong>of</strong>ected using the MEF Nucle<strong>of</strong>ector Kit 1 and a plasmid encoding the<br />

enhanced green fluorescent protein eGFP. 24 hours post nucle<strong>of</strong>ection, the <strong>cells</strong><br />

were analyzed by fluorescence microscopy. (Photograph courtesy <strong>of</strong> Dr. H. Hermanns<br />

and Pr<strong>of</strong>. P.H. Heinrich, University <strong>of</strong> Aachen, Germany)<br />

Nucle<strong>of</strong>ection <strong>of</strong> Mouse ES <strong>cells</strong><br />

knockout mice. In addition, the cell-type specific nucle<strong>of</strong>ection<br />

conditions optimized for gentle DNA delivery in vitro support<br />

differentiation <strong>of</strong> transfected mouse ES <strong>cells</strong>. Together with other<br />

Nucle<strong>of</strong>ector Kits for primary mouse <strong>cells</strong>, genetic manipulation<br />

and analysis <strong>of</strong> various cell types is made possible.<br />

Successfully tested ES cell lines:<br />

› WW6<br />

› R1<br />

› CK-35<br />

› H7<br />

› U295V (an E14 subclone)<br />

Ordering information<br />

Mouse ES Cell Nucle<strong>of</strong>ector Kit Cat. No.: VPH-1001


H<br />

› Tips and hints<br />

Selection <strong>of</strong> appropriate Nucle<strong>of</strong>ector Kit<br />

Each Nucle<strong>of</strong>ector Kit contains a specific<br />

Optimized Protocol for the respective cell type.<br />

This protocol can be used for the nucle<strong>of</strong>ection<br />

<strong>of</strong> either siRNA oligos or vectors without any<br />

further changes <strong>of</strong> electrical parameters.<br />

Methods for generating siRNA<br />

Several different methods for generating siRNA<br />

are known; such as:<br />

› synthetic siRNA oligos<br />

› in vitro transcribed oligos<br />

› siRNA expression vectors<br />

Take a short cut for your<br />

RNAi experiments –<br />

the ‘essentials’ about Nucle<strong>of</strong>ector technology and RNAi<br />

The Nucle<strong>of</strong>ector technology has proven its capability for efficient delivery <strong>of</strong> siRNA into hardto-transfect<br />

cell lines and primary <strong>cells</strong>. To save your time and allow for a successful setup <strong>of</strong> RNAi<br />

experiments in your lab we compiled some information on the ‘essentials’ about RNAi and the<br />

Nucle<strong>of</strong>ector technology. Some <strong>of</strong> the most crucial aspects are listed below. The opposite page<br />

outlines how to establish RNAi for your particular cell type. For further questions on your RNAi<br />

experiments contact our Scientific Support Team.<br />

Tips for a successful<br />

siRNA experiment<br />

All methods can be used together with the<br />

Nucle<strong>of</strong>ector technology for efficient delivery<br />

<strong>of</strong> siRNA into primary <strong>cells</strong> and cell lines.<br />

› page 12 › amaxa news 02<br />

siRNA oligo design<br />

Design and selection <strong>of</strong> siRNA oligo target sequences play an<br />

important role. In general, testing <strong>of</strong> 2-6 different siRNA oligos is<br />

sufficient to find one or more siRNA oligos that display good silencing<br />

effects. We recommend using Qiagen’s siRNA oligos and<br />

design s<strong>of</strong>tware.<br />

siRNA oligo concentration<br />

The amount <strong>of</strong> siRNA oligo required to efficiently downregulate a<br />

specific gene has to be determined empirically and depends on<br />

many parameters, such as efficiency <strong>of</strong> siRNA oligo sequence,<br />

method <strong>of</strong> oligo preparation, cell type, mRNA abundance, mRNA<br />

turnover etc. amaxa’s R&D team recommends to use between 0.14<br />

and 1.4 µg siRNA.<br />

Labeled siRNA oligos<br />

Fluorescent labeled siRNA can be used to analyze transfection<br />

efficiency. FITC or Rhodamine labeled siRNA oligos should be<br />

analyzed after 0.5-3 hours. Cy5 labeled siRNAs can be detected<br />

up to 24 hours post nucle<strong>of</strong>ection.


d<br />

› Tips and hints<br />

eGFP<br />

amaxa web information www.amaxa.com/RNAi<br />

A simple strategy for RNAi in cell lines and primary <strong>cells</strong><br />

Follow the scheme below for RNAi experiments in your primary cell or cell line <strong>of</strong> interest.<br />

primary <strong>cells</strong><br />

Optimized Protocol<br />

available / yes<br />

Choose the appropriate Nucle<strong>of</strong>ector<br />

Kit for cell type <strong>of</strong> interest.<br />

Use the Optimized Protocol and an eGFP<br />

plasmid to establish the Nucle<strong>of</strong>ector<br />

technology for your cell type.<br />

Alternatively, fluorescence labeled<br />

siRNA oligos can be used.<br />

Establish RNAi experiments with positive<br />

control siRNA oligos, e.g. vimentin or<br />

lamin A/C.<br />

Nucle<strong>of</strong>ection <strong>of</strong> eGFP plasmid should<br />

be included as a positive control for<br />

transfection efficiency.<br />

Efficient gene silencing in primary <strong>cells</strong><br />

› page 13 › www.amaxa.com<br />

cell lines<br />

Use Cell Line Optimization<br />

Nucle<strong>of</strong>ector Kit.<br />

Optimize nucle<strong>of</strong>ection conditions with<br />

eGFP plasmid according to the optimization<br />

strategy:<br />

Use optimized parameters to establish<br />

RNAi experiments.<br />

V<br />

Optimized Protocol<br />

available / no<br />

Solution R T V<br />

R T<br />

V<br />

program 1 A-23 A-23 A-23<br />

program 2 A-27 A-27 A-27<br />

program 3 T-20 T-20 T-20<br />

program 4 T-27 T-27 T-27<br />

program 5 T-16 T-16 T-16<br />

program 6 T-01 T-01 T-01<br />

program 7 G-16 G-16 G-16<br />

program 8 O-17 O-17 O-17<br />

Efficient gene silencing in cell lines.<br />

+


› Product update<br />

Nucle<strong>of</strong>ector technology and RNAi -<br />

examples for successful knockdown provided by Nucle<strong>of</strong>ector users<br />

The following examples demonstrate an efficient targeted knockdown <strong>of</strong> gene expression by introducing siRNA via<br />

the Nucle<strong>of</strong>ector technology. In addition, the data show the suitability <strong>of</strong> the Nucle<strong>of</strong>ector technology in answering<br />

scientific questions by RNAi especially in hard-to-transfect cell lines and primary <strong>cells</strong> for your basic and applied<br />

research needs.<br />

* winner <strong>of</strong> publication award, see page 18<br />

RNAi to study the caspase-8 mediated<br />

activation <strong>of</strong> T <strong>cells</strong><br />

Chun et al. (2002) (1) studied the role <strong>of</strong> caspase-8<br />

in T lymphocyte activation. Therefore, resting<br />

T lymphoctes were nucle<strong>of</strong>ected with siRNA<br />

against caspase-8. Transfected <strong>cells</strong> were then<br />

stimulated with CD3 and CD28, and the effect on<br />

T cell activation markers CD25 and CD69 was<br />

analyzed by FACS. The data nicely show a specific<br />

downregulation. Caspase-8 siRNA leads to a<br />

reduction in activation marker expression<br />

indicating a role <strong>of</strong> caspase-8 not only in apoptosis<br />

but also in T cell activation.<br />

Downregulation <strong>of</strong> eGFP in primary mouse<br />

neurons with siRNA<br />

Primary mouse neurons were co-nucle<strong>of</strong>ected<br />

with GFP and siRNA against GFP. GFP expression<br />

was significantly downregulated.<br />

› page 14 › amaxa news 02<br />

A CD69 (fold induction) B CD25 (fold induction)<br />

60<br />

50<br />

40<br />

30<br />

20<br />

10<br />

NS C8<br />

0 Pr2 Pr2 Pr3 Pr3 NS<br />

20 40 20 40 50 nM<br />

Figure 1: Downregulation <strong>of</strong> lymphocyte activation by nucle<strong>of</strong>ection <strong>of</strong> caspase-8<br />

siRNA oligonucleotides. Resting PBLs were transfected with the Nucle<strong>of</strong>ector technology<br />

with siRNA oligonucleotides in two different concentrations that were either nonspecific<br />

(NS) or specific for caspase-8 (Pr2 and 3) and were then stimulated with CD3 and<br />

CD28 for 18 hours. Induction <strong>of</strong> surface expression <strong>of</strong> CD69 is shown in (A) and CD25 in<br />

(B). Insets show by RT-PCR that less caspase-8 mRNA is produced with siRNA pair 3 (C8)<br />

than with non-specific siRNA (NS). (Data reproduced with permission from Nature)<br />

A B<br />

C D<br />

30<br />

25<br />

20<br />

15<br />

10<br />

5<br />

0 Pr2 Pr2 Pr3 Pr3 NS<br />

20 40 20 40 50 nM<br />

Figure 2: Downregulation <strong>of</strong> eGFP in primary mouse cortical neurons with siRNA<br />

oligonucleotides. Cortical neurons isolated from mouse embryos (E17) were co-nucle<strong>of</strong>ected<br />

using the Mouse Neuron Nucle<strong>of</strong>ector Kit with a plasmid encoding the eGFP<br />

protein (CMV promoter) and siRNA oligonucleotides against eGFP. Four days post<br />

nucle<strong>of</strong>ection, <strong>cells</strong> were fixed, mounted on a cover slide and analyzed by fluorescence<br />

microscopy. Nuclei were stained with DAPI (C, D) to show comparable number <strong>of</strong> <strong>cells</strong><br />

per sample. Compared to control (A), overexpression <strong>of</strong> eGFP can be significantly<br />

downregulated in co-nucle<strong>of</strong>ection experiment (B). (Courtesy <strong>of</strong> H-J. Kim and T.<br />

Vartanian, Beth Israel Deaconess Medical Center, Dept. <strong>of</strong> Neurology Boston, MA, USA)


d<br />

› Product update<br />

RNAi to study the early commitment phase <strong>of</strong><br />

apoptosis<br />

Bidere et al. (2003) (2) analyzed the mitochondrial<br />

apoptotic pathway activated by staurosporine<br />

(STS). The publication reveals the role <strong>of</strong> Cathepsin<br />

D (Cat D), Bax and AIF (apoptosis inducing<br />

factor) in activating the mitochondrial pathway.<br />

Cat D, Bax and AIF were efficiently knocked down<br />

by nucle<strong>of</strong>ection <strong>of</strong> specific siRNA in primary<br />

human T <strong>cells</strong>. Subsequent stimulation <strong>of</strong> apoptosis<br />

with STS showed that Cat D triggers Bax<br />

activation and AIF release.<br />

The examples shown here addressed the sequential<br />

relationship between Cat D activity, Bax conformational<br />

activation, and mitochondrial AIF<br />

release. Optimum Cat D knockdown was found at<br />

1.5 µM Cat D-siRNA (Figure A). Following exposure<br />

to STS, these <strong>cells</strong> no longer displayed Bax<br />

immunoreactivity (Figure B), nor AIF relocation<br />

(data not shown). It was shown that the depletion<br />

<strong>of</strong> Cat D protein by RNAi results in the<br />

suppression <strong>of</strong> Bax activation and <strong>of</strong> AIF release<br />

in STS-treated <strong>cells</strong>.<br />

› page 15 › www.amaxa.com<br />

Figure 3: Downregulation <strong>of</strong> Cat D expression by RNAi results in the<br />

suppression <strong>of</strong> Bax activation in primary human T lymphocytes<br />

Resting human T lymphocytes were nucle<strong>of</strong>ected with Cat D-siRNA. Negative controls<br />

consisted <strong>of</strong> untransfected <strong>cells</strong>, <strong>of</strong> mock transfected <strong>cells</strong>, and <strong>of</strong> <strong>cells</strong> transfected<br />

with an inefficient siRNA (control siRNA). 16 hours later <strong>cells</strong> were stimulated<br />

with the mitogenic CD2 mAb pair (GT2 + T11.1) for four days. (A) shows percentages<br />

<strong>of</strong> <strong>cells</strong> displaying Cat D-associated immun<strong>of</strong>luorescence (<strong>cells</strong> are detected by DAPI<br />

staining and conventional fluorescence microscopy). (B) Four days after stimulation,<br />

Cat D-siRNA-transfected <strong>cells</strong> were incubated with 100 nM STS for 90 min. Cells were<br />

counted for Bax-NT associated immun<strong>of</strong>luorescence by conventional microscopy.<br />

(Data taken from Bidere et al. (2003); reproduced with permission from Journal <strong>of</strong><br />

Biological Chemistry)<br />

References<br />

1. Chun HJ et al. (2002) Nature; 419:395-399<br />

2. Bidere N et al. (2003) J Biol Chem; 278:31401-31411<br />

amaxa web information RNAi www.amaxa.com/RNAi<br />

publications www.amaxa.com/citations<br />

% Cat D positive <strong>cells</strong><br />

A Cat D knockdown B Suppression <strong>of</strong> Bax after<br />

Cat D down regulation<br />

100<br />

90<br />

80<br />

70<br />

60<br />

50<br />

40<br />

30<br />

20<br />

10<br />

0<br />

not transfected<br />

0 1.5 0.75 1.5(µM)<br />

mock<br />

control<br />

Cat D<br />

Cat D<br />

% Bax-NT positive <strong>cells</strong><br />

100<br />

75<br />

50<br />

25<br />

siRNAs not transfected<br />

0<br />

0 1.5 1.5(µM)<br />

mock<br />

pretreatment<br />

STS<br />

no<br />

control<br />

siRNAs<br />

Cat D


› Background information<br />

Basics about nucle<strong>of</strong>ection and<br />

the easiest way to transfect your<br />

cell line<br />

Thank you for your remarks on our first newsletter. Due to the great response to the first edition <strong>of</strong> ‘amaxa news’ we<br />

selected two <strong>of</strong> the most frequent requested topics to be further highlighted in this edition <strong>of</strong> amaxa news. Get information<br />

on the Nucle<strong>of</strong>ector technology basics and learn more about the easiest way to transfect your cell line <strong>of</strong><br />

interest. In addition, we set up the ‘amaxa user forum’ to give you the opportunity to discuss your topics <strong>of</strong> interest<br />

with other Nucle<strong>of</strong>ector users (see page 19 in this newsletter).<br />

The Nucle<strong>of</strong>ector technology - what is it all about?<br />

The Nucle<strong>of</strong>ector technology is a major breakthrough in transfection<br />

since it delivers DNA straight into the nucleus <strong>of</strong> cell lines,<br />

primary tumor <strong>cells</strong> and primary <strong>cells</strong>. This is achieved by an<br />

optimization <strong>of</strong> the two components <strong>of</strong> nucle<strong>of</strong>ection: electrical<br />

parameters and cell type specific surroundings. The Nucle<strong>of</strong>ector<br />

Device delivers unique electrical parameters – already individually<br />

optimized for each cell type. For successful transfection, you just<br />

select the appropriate Nucle<strong>of</strong>ector program and press ‘Start’.<br />

The Nucle<strong>of</strong>ector Kits contain Nucle<strong>of</strong>ector Solution and<br />

Supplement, specifically developed for each cell type. They provide<br />

a cell-friendly environment during the nucle<strong>of</strong>ection procedure<br />

and support the delivery <strong>of</strong> DNA straight into the cell nucleus<br />

yielding high efficiencies and cell viability.<br />

This combination guarantees gene expression shortly after<br />

transfection (see Figure 1) even in non-dividing primary <strong>cells</strong>.<br />

The Nucle<strong>of</strong>ection procedure does not impair cell functionality.<br />

Nucle<strong>of</strong>ected <strong>cells</strong> show long-term survival in culture and can<br />

easily be differentiated or stimulated. Check our homepage<br />

to view citations for the successful use <strong>of</strong> the Nucle<strong>of</strong>ector<br />

technology (www.amaxa.com/citations).<br />

Nucle<strong>of</strong>ector technology at a glance<br />

› DNA delivery straight into the nucleus<br />

› short time until analysis<br />

› maintenance <strong>of</strong> cell functionality<br />

› applicable for many different substrates<br />

› ready to use protocols<br />

› page 16 › amaxa news 02<br />

Nucle<strong>of</strong>ector technology – DNA delivery straight<br />

into the nucleus<br />

50<br />

40<br />

30<br />

20<br />

10<br />

0<br />

percentage <strong>of</strong> <strong>cells</strong> (n=3)<br />

Expression <strong>of</strong> cytoplasmic eGFP and surface<br />

molecule H-2Kk in unstimulated human T <strong>cells</strong><br />

10 30 100 300 1000<br />

time after nucle<strong>of</strong>ection (min)<br />

Figure 1: Expression kinetics <strong>of</strong> two proteins showing the<br />

early start <strong>of</strong> protein expression after nucle<strong>of</strong>ection in<br />

unstimulated primary human T <strong>cells</strong>.<br />

Human PBMCs were nucle<strong>of</strong>ected with either the cytoplasmic<br />

protein eGFP or the surface protein H-2K k , a mouse MHC class I<br />

heavy chain molecule. Due to the direct transport <strong>of</strong> DNA into<br />

the cell nucleus, expression <strong>of</strong> eGFP can already be detected<br />

after 40 min. Expression <strong>of</strong> H-2K k is delayed as the protein has<br />

to be processed and transported to the cell surface.


d<br />

› Background information<br />

How do I nucle<strong>of</strong>ect my cell line?<br />

The easiest way to find the appropriate nucle<strong>of</strong>ection<br />

conditions for your cell line is to visit our<br />

webpage at www.amaxa.com/celldatabase.<br />

The amaxa cell database on our homepage gives<br />

you extended information on the nucle<strong>of</strong>ection<br />

conditions <strong>of</strong> many different cell lines. One <strong>of</strong> the<br />

following three cases may apply for your cell line<br />

<strong>of</strong> interest:<br />

1. Cell lines optimized by amaxa: These are cell<br />

lines where amaxa’s R&D team has developed<br />

a ready-to-use Optimized Protocol indicating<br />

optimal nucle<strong>of</strong>ection conditions such as best<br />

Nucle<strong>of</strong>ector programs and Nucle<strong>of</strong>ector<br />

Solution. These Optimized Protocols can be<br />

downloaded from our webpage.<br />

2. Customer cell line data: For a multitude <strong>of</strong> cell<br />

lines we can <strong>of</strong>fer preliminary data from other<br />

scientists who used the Cell Line Optimization<br />

Nucle<strong>of</strong>ector Kit. These data may help you<br />

with your research by providing basic nucle<strong>of</strong>ection<br />

conditions for your particular cell type.<br />

This database is an increasing source <strong>of</strong> information<br />

and will provide a platform to share<br />

amaxa web information Nucle<strong>of</strong>ector technology www.amaxa.com/technology publications www.amaxa.com/citations<br />

overview www.amaxa.com/celldatabase user forum forum.amaxa.com<br />

› page 17 › www.amaxa.com<br />

your experience with other Nucle<strong>of</strong>ector users. Therefore,<br />

amaxa encourages you to submit your transfection results<br />

including transfection efficiency and viability. Simply fill out<br />

the optimization form and receive a gift for your contribution.<br />

3. Any other cell line: For any other cell line not yet optimized by<br />

amaxa or tested by other Nucle<strong>of</strong>ector users, use our Cell<br />

Line Optimization Nucle<strong>of</strong>ector Kit to find the optimal<br />

nucle<strong>of</strong>ection settings.<br />

www.amaxa.com/celldatabase<br />

› Complete listing <strong>of</strong> all Nucle<strong>of</strong>ector Kits for primary <strong>cells</strong> and<br />

cell lines<br />

› Overview <strong>of</strong> average transfection efficiencies for primary <strong>cells</strong><br />

and cell lines<br />

› Links to Optimized Protocols<br />

› Links to product-specific information<br />

› Access to amaxa cell line database for obtaining and submitting<br />

transfection data<br />

Cell Line Optimization Nucle<strong>of</strong>ector Kit<br />

› Achieve transfection for virtually any cell line or primary<br />

tumor cell.<br />

› Contains three Nucle<strong>of</strong>ector Solutions and gives eight<br />

programs for a simple optimization within just two weeks.<br />

› Constant support and fine tuning from amaxa’s Scientific<br />

Support Team.


d<br />

› Produkt amaxa insights News<br />

› Highlighted paper<br />

Fly amaxa competition<br />

winners announced<br />

amaxa is pleased to announce the winners <strong>of</strong> the 2003 “Fly amaxa” publication awards, established to reward published<br />

studies with the highest scientific value that used Nucle<strong>of</strong>ector technology. The high quality <strong>of</strong> publications submitted<br />

for consideration made the selection process extremely difficult for our scientific committee and we would like to<br />

congratulate and thank all <strong>of</strong> the participants. The prize money listed for each entry below is awarded to help fund<br />

attendance at a scientific conference <strong>of</strong> the winner’s choice.<br />

1 st prize $ 2.000<br />

2 nd prize $ 1.500<br />

3 rd prize $ 1.000<br />

Hyung J. Chun, for his publication<br />

”Pleiotropic defects in lymphocyte activation caused by caspase-8 mutations lead to<br />

human immunodeficiency.” (Nature 2002; 419:395-399)<br />

Julie Harriague, for her publication<br />

”Imaging antigen-induced PI3K activation in T <strong>cells</strong>.”<br />

(Nature Immunology 2002; 3:1090-1096)<br />

Hyeseon Cho, for his publication<br />

”Pericyte-specific expression <strong>of</strong> Rgs5: implications for PDGF and EDG receptor<br />

signaling during vascular maturation.” (FASEB Journal 2003; 17:440-442)<br />

Highlighted paper<br />

Messi M, Giacchetto I, Nagata K, Lanzavecchia A, Natoli G, Sallusto F. (2003) Memory and flexibility <strong>of</strong> cytokine gene<br />

expression as separable properties <strong>of</strong> human TH1 and TH2 lymphocytes. Nat Immunol. 4(1):78-86.<br />

% Cytokine positive <strong>cells</strong><br />

40<br />

30<br />

20<br />

10<br />

0<br />

HA -<br />

HA +<br />

IFN-g IL-4<br />

= T H1 = T H2<br />

› page 18 › amaxa news 02<br />

The authors studied memory <strong>of</strong> flexibility <strong>of</strong> differentiated T lymphocytes an their<br />

ability to switch between the T helper cell type 1 (TH1) and TH2 lineage.<br />

In the experiment shown here, TH2 <strong>cells</strong> were nucle<strong>of</strong>ected with a T-bet expression<br />

vector (HA+, dark blue bars) or control vector (HA-, light blue bars) and analyzed<br />

for cytokine production after stimulation. Overexpression <strong>of</strong> T-bet transcription<br />

factors caused a re-commitment <strong>of</strong> the TH2 to the TH1 lineage. Between 12-22% <strong>of</strong><br />

TH2 <strong>cells</strong> expressing ectopic T-bet rapidly acquired the ability to produce IFN-g (TH1 specific response) indicating that T-bet expression plays a major role in commitment<br />

to TH2 lineage.<br />

amaxa web information citations www.amaxa.com/citations


d<br />

› amaxa insights<br />

new<br />

Discuss your<br />

topics around<br />

nucle<strong>of</strong>ection<br />

Join now<br />

amaxa user forum<br />

An increasing number <strong>of</strong> laboratories worldwide<br />

are using the Nucle<strong>of</strong>ector and gaining<br />

extensive experience on transfection with the<br />

Nucle<strong>of</strong>ector technology. This knowledge is an<br />

important source <strong>of</strong> information for potential<br />

users and those that are already applying the<br />

technology for a variety <strong>of</strong> different research<br />

questions. To give you the opportunity to share<br />

Be part <strong>of</strong> the ‘Nucle<strong>of</strong>ector community’! You<br />

can access the user forum via the amaxa homepage<br />

(www.amaxa.com). Just click on ‘user<br />

forum’ in the horizontal navigation bar. Alterna-<br />

amaxa web information user forum forum.amaxa.com<br />

› page 19 › www.amaxa.com<br />

and benefit from this information we set up the<br />

amaxa user forum. You can post your questions<br />

or comments in four categories:<br />

› primary <strong>cells</strong><br />

› cell lines<br />

› siRNA<br />

› miscellaneous<br />

tively enter ‘forum.amaxa.com’ in your browser<br />

to access the forum directly. To post a message<br />

you have to register. Simply follow the instructions<br />

on the forum page.


[k]<br />

› amaxa worldwide<br />

WAKO Pure Chemicals –<br />

amaxa’s competent partner in Japan<br />

When Japanese scientists want to use the Nucle<strong>of</strong>ector technology, they can trust in an outstanding<br />

partner. WAKO Pure Chemicals has been distributing the Nucle<strong>of</strong>ector technology and<br />

the complete range <strong>of</strong> Nucle<strong>of</strong>ector Kits to Japanese scientists since February 2002. WAKO has<br />

established the Nucle<strong>of</strong>ector technology as state <strong>of</strong> the art in primary cell and cell line transfection<br />

in Japan. This is reflected by the increasing number <strong>of</strong> publications describing the successful use <strong>of</strong><br />

the Nucle<strong>of</strong>ector technology in Japanese laboratories. Join us to learn more about amaxa’s partner<br />

and the support WAKO provides to the scientific community in Japan.<br />

One <strong>of</strong> WAKO’s missions is to<br />

provide excellent support to the<br />

Japanese scientists and to help<br />

them in their daily workflow.<br />

They aim to be a ”R & D oriented<br />

corporation” and a ”corporation<br />

trusted by customers”.<br />

Construction <strong>of</strong> an information<br />

network and complete scientific<br />

WAKO research laboratory in Osaka, support is certainly one reason<br />

Japan<br />

for the great success in Japan.<br />

In addition to the headquarters in Osaka, WAKO has a branch<br />

<strong>of</strong>fice in Tokyo and 12 regional <strong>of</strong>fices. Furthermore WAKO works<br />

with 62 partners located in 218 places throughout Japan. As a<br />

result <strong>of</strong> this, approximately 1100 sales assistants provide competent<br />

customer support and are complemented by experienced<br />

scientific support staff.<br />

Founded in 1922, WAKO Pure Chemical Ind., Ltd. is well known in<br />

Japanese labs as a supplier <strong>of</strong> laboratory chemicals and diagnostic<br />

reagents with production facilities in Japan, Europe und the<br />

United States and a proprietary distribution sy<strong>stem</strong> and research<br />

Ordering and scientific support ooga.yoshinobu@wako-chem.co.jp<br />

› page 20 › amaxa news 02<br />

laboratories. With amaxa’s Nucle<strong>of</strong>ector technology<br />

WAKO has extended its product portfolio<br />

in the Life Sciences field.<br />

As a matter <strong>of</strong> course WAKO has designed specific<br />

catalogs, newsletters, hand-outs and brochures<br />

in Japanese. Furthermore, WAKO generated<br />

siRNA data in cooperation with Nippon Genetech,<br />

a local supplier <strong>of</strong> chemically synthesized<br />

siRNA oligonucleotides, demonstrating the<br />

functionality <strong>of</strong> the Nucle<strong>of</strong>ector technology<br />

also in the area <strong>of</strong> RNAi.<br />

Constant exchange <strong>of</strong> information is guaranteed<br />

since WAKO participates in scientific meetings<br />

and organizes workshops and seminars. At regular<br />

intervals WAKO hosts seminars during major<br />

scientific conferences where amaxa scientists as<br />

well as Japanese users <strong>of</strong> the Nucle<strong>of</strong>ector<br />

technology share their extensive transfection<br />

knowledge and hands-on experience.<br />

d<br />

WAKO web information www.wako-chem.co.jp


d<br />

› amaxa worldwide<br />

Meet amaxa at your bench<br />

One <strong>of</strong> the most likely ways in which you first hear about amaxa is through one <strong>of</strong> our experienced European or US<br />

sales managers. Not only do they demonstrate the Nucle<strong>of</strong>ector technology in your lab and arrange a test use for<br />

you, they normally act as the first contact person in answering your questions. To ensure that they give you the best<br />

possible customer support amaxa continually provides each sales manager with trainings to keep them well informed.<br />

Meet your amaxa sales representative on the<br />

phone, in your lab or at our booth during a scientific<br />

conference. Check amaxa’s web page to find<br />

out who your local sales representative is or call<br />

our Scientific Support Team for contact details.<br />

Australia / New Zealand<br />

Integrated Sciences Pty. Ltd.<br />

phone +61-1800-252-204<br />

email tech@integratedsci.com.au<br />

Canada<br />

ESBE Scientific<br />

phone +1-800-268-3477<br />

email custserv@esbe.com<br />

China<br />

Jingmei Biotech co. Ltd.<br />

phone +86-7558-3546 194<br />

email shenzhen@jingmei.com<br />

Czech Republic<br />

KRD - molecular technologies sro<br />

phone +42-02-5162 6019<br />

email viktor.k@krd.cz<br />

Denmark<br />

REACTIONLAB AS<br />

phone +45-7027 9595<br />

email info.denmark@reaction-lab.com<br />

Finland<br />

REACTIONLAB OY<br />

phone +358-2-410 17 46<br />

email info.finland@reaction-lab.com<br />

India<br />

Genetix Biotech Asia Pvt. Ltd.<br />

phone +991-112 542 1714<br />

email genetix@nda.vsnl.net.in<br />

amaxa’s international sales team<br />

amaxa’s distributors around the world<br />

Israel<br />

Tec-O-Pharm-Libra<br />

phone +972-2-587 08 75<br />

email itzik@toplibra.co.il<br />

Italy<br />

Instrumentation Laboratory spa<br />

phone +39-0225-22 766<br />

email beretta@itmil.ilww.com<br />

Japan<br />

Wako Pure Chemical Industries, Ltd.<br />

phone +81-6-6203-2756<br />

email ooga.yoshinobu@wako-chem.co.jp<br />

Korea<br />

Young In Scientific Co., Ltd.<br />

phone +82-2-519 73 45<br />

email shinhyuk@youngin.com<br />

Malaysia<br />

Research Biolabs Malaysia<br />

phone +603 8070 3101<br />

email biolabs@tm.net.my<br />

Norway<br />

REACTIONLAB AS<br />

phone +47-66 98 97 42<br />

email info.norway@reaction-lab.com<br />

Poland<br />

MEDianus<br />

phone +48-12-665 31 31<br />

email medianus@medianus.net<br />

Singapore<br />

Research Biolabs Pty. Ltd.<br />

Singapore<br />

phone +65-6273 1066<br />

email sales@researchbiolabs.com<br />

Slovakia<br />

KRD - molecular technologies sro<br />

phone +421-2-645 340 41<br />

email krd@krd.sk<br />

Spain / Portugal<br />

IZASA, S.A.<br />

phone +34-902-20 30 90<br />

email CLC@izasa.es<br />

techservice:<br />

email consultasbiotec@izasa.es<br />

Sweden<br />

REACTIONLAB SVERIGE AB<br />

phone +46-18-14 90 00<br />

email info.sweden@reaction-lab.com<br />

Taiwan<br />

Taigen Bioscience Corporation<br />

phone +886-2-2880 2913<br />

email taigen@ms10.hinet.net<br />

Thailand<br />

Bio-Active Co., Ltd.<br />

phone +662-295-4804<br />

email psuwan@inet.co.th<br />

amaxa web information For worldwide ordering details www.amaxa.com/ordering<br />

› page 21 › www.amaxa.com


d<br />

› FAQ<br />

FAQ - frequently asked questions<br />

on Nucle<strong>of</strong>ector technology in neurobiology and immunology<br />

› I noticed amaxa recommends a really<br />

high cell density for plating <strong>of</strong> nucle<strong>of</strong>ected<br />

neurons. Is this advisable and how do I<br />

get these cell numbers?<br />

›› We recommend to prepare and transfect a<br />

“mixed glial culture”. This provides you with<br />

enough <strong>cells</strong> to get 4x106 <strong>cells</strong> per nucle<strong>of</strong>ection<br />

sample from just one mouse. By using <strong>of</strong> this<br />

“high” amount <strong>of</strong> <strong>cells</strong> during nucle<strong>of</strong>ection and<br />

plating them as densely as recommended you<br />

will increase cell survival significantly. The glial<br />

<strong>cells</strong> support neuron recovery after nucle<strong>of</strong>ection.<br />

By changing the culture medium to a<br />

medium that impairs glial cell growth you can<br />

start depleting these <strong>cells</strong> 2-4 h after nucle<strong>of</strong>ection<br />

to get a pure neuron culture.<br />

› I’m transfecting neurons in a mixed glial<br />

culture. Is there an ’optimal’ way to<br />

influence cell survival and selection for<br />

neurons after nucle<strong>of</strong>ection?<br />

›› To improve survival it is crucial to change<br />

medium two hours post nucle<strong>of</strong>ection since any<br />

debris present in the culture will impair cell<br />

survival. If you are interested in getting a pure<br />

neuronal cell population as fast as possible you<br />

can switch to culture medium II including the<br />

cytotoxin cytosine arabinoside (ARA-C) at this<br />

time point. Alternatively, you can increase cell<br />

survival by exchanging with culture medium I<br />

(contains no ARA-C) two hours post nucle<strong>of</strong>ection<br />

for another 24 or 48 hours.<br />

More information needed?<br />

It takes just one e-mail, phone call or fax to<br />

amaxa web information<br />

www.amaxa.com/faq/<br />

Find all Optimized Protocols at<br />

www.amaxa.com/celldatabase<br />

› page 22 › amaxa news 02<br />

› Is there a special recommendation on T cell enrichment<br />

before nucle<strong>of</strong>ection?<br />

›› For nucle<strong>of</strong>ection it is preferable to use T cell populations<br />

enriched by magnetic separation (e.g. MACS Microbeads by<br />

Miltenyi Biotec) or by a rosetting method. For magnetic separation<br />

we recommend negative selection or detaching beads after<br />

enrichment. Do not apply protocols using hypo-osmolar buffers.<br />

This may lead to high cell mortality after nucle<strong>of</strong>ection.<br />

› Are there any recommendations to avoid excessive<br />

mortality during T cell nucle<strong>of</strong>ection?<br />

›› Try to keep the DNA amount for nucle<strong>of</strong>ection quite low<br />

(e.g. 1 µg plasmid DNA) since higher DNA amounts might cause<br />

increasing toxicity and mortality. It is also important to use<br />

highly purified DNA (e.g. QI<strong>AG</strong>EN ® EndoFree ® Plasmids Kits). The<br />

A260:A280 ratio should be at least 1.8 for nucle<strong>of</strong>ection.<br />

› Is there a way to increase cell viability after<br />

nucle<strong>of</strong>ection for dendritic cell transfection?<br />

›› LPS (lipopolysaccharides) has a strong negative effect on cell<br />

viability. Please make sure that all components you use for<br />

dendritic cell culture and transfection, e.g. PBS, FCS and especially<br />

DNA, are LPS free. We recommend additionally purifying your<br />

DNA by precipitating it twice with 20% PEG/2.5 M NaCl.<br />

› I want to stimulate T <strong>cells</strong> post nucle<strong>of</strong>ection.<br />

Is there anything I have to bear in mind?<br />

›› After nucle<strong>of</strong>ection, just wait for at least four hours before<br />

stimulation. Stimuli immediately after nucle<strong>of</strong>ection may lead to<br />

increased cell mortality.<br />

obtain more information on the Nucle<strong>of</strong>ector technology. Just<br />

contact our Scientific Support Team.<br />

Scientific Support Europe/World USA<br />

phone +49(0)221-99199-400 (240) 632-9110<br />

fax +49(0)221-99199-499 (240) 632-9112<br />

e-mail techservice@amaxa.com techservice.US@amaxa.com


d<br />

› › amaxa Produkt insights News<br />

We are looking forward to<br />

welcoming you at amaxa’s<br />

booth at one <strong>of</strong> the following<br />

meetings this year!<br />

www.amaxa.com/meetings<br />

RNAi Quest<br />

› › page page 23 › › www.amaxa.com<br />

www.amaxa.com<br />

Meet amaxa in 2003 at:<br />

Nov 14 - 17 European Society for Gene Therapy,<br />

11th Annual Meeting, Booth #1, Edinburgh, Scotland<br />

Nov 25 - 26 International Biotech 2003,<br />

Booth #B102, London, England<br />

Nov 26 - 28 French Society for Immunology – Annual Congress,<br />

Antibes, France<br />

Dec 2 - 5 British Society for Immunology – Annual Congress,<br />

Booth #35, Harrogate, England<br />

Dec 6 - 9 ASH - American Society for Hematology,<br />

45th Annual Meeting, Booth #815, San Diego, USA<br />

Dec 13 - 17 ASCB – American Society for Cell Biology,<br />

43rd Annual Meeting, Booth #1533, San Francisco, USA<br />

Dec 18 - 19 Dutch Society for Immunology – Annual Meeting,<br />

Noordwijkerhout, The Netherlands<br />

newGet the highscore!<br />

amaxa’s new RNAi game<br />

Meet ‘Electroman’ and ‘Solutiongirl’<br />

on their challenging quest<br />

to deliver siRNA into mammalian<br />

<strong>cells</strong> and to knock out genes.<br />

But watch for the evil mycoplasma<br />

monsters and other traps on<br />

your way!<br />

www.amaxa.com/RNAiQuest<br />

d www.amaxa.com/RNAiQuest


WAA-1001_02<br />

amaxa GmbH<br />

Nattermannallee 1<br />

50829 Koeln<br />

Germany<br />

Scientific Support Scientific Support<br />

Europe/World USA<br />

phone +49(0)221-99199-400 phone (240) 632-9110<br />

fax +49(0)221-99199-499 fax (240) 632-9112<br />

e-mail techservice@amaxa.com e-mail techservice.US@amaxa.com<br />

Nucle<strong>of</strong>ection <strong>of</strong> rat<br />

oligodendrocytes<br />

Benefit from the Nucle<strong>of</strong>ector<br />

technology for rat oligodendrocytes<br />

> first efficient non-viral transfection<br />

technology for primary<br />

rat oligodendrocytes<br />

> for precursor <strong>cells</strong> with full<br />

potential for differentiation<br />

into oligodendrocytes<br />

› www.amaxa.com<br />

amaxa Inc.<br />

814 West Diamond Avenue<br />

Suite 110<br />

Gaithersburg, MD 20878<br />

USA<br />

Nucle<strong>of</strong>ection <strong>of</strong> rat oligodendrocytes<br />

P0/1 rat oligodendrocyte precursor <strong>cells</strong><br />

(forebrain) were nucle<strong>of</strong>ected with a<br />

plasmid encoding the enhanced green<br />

fluorescent protein eGFP. Subsequently<br />

the <strong>cells</strong> were cultured for 7 days in<br />

a chemically defined medium. (Photograph<br />

courtesy <strong>of</strong> Dr. Wengbin Deng,<br />

Children’s Hospital, Boston, USA)

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