Essential Cell Biology 5th edition
G:12 GlossaryN-terminusThe end of a polypeptide chain that carries a free α-aminogroup.Na + pump (or Na + -K + ATPase)Transporter found in the plasma membrane of most animalcells that actively pumps Na + out of the cell and K + in usingthe energy derived from ATP hydrolysis.NAD +A molecule that accepts a hydride ion (H – ) from a donormolecule, thereby producing the activated carrier NADH.Widely used in the energy-producing breakdown of sugarmolecules. (See Figure 3–34.)NADHActivated carrier of electrons that is widely used in theenergy-producing breakdown of sugar molecules. (SeeFigure 3–34.)NADP +Molecule that accepts a hydride ion (H – ) from a donormolecule, thereby producing the activated carrier NADPH;widely used as an electron donor in biosynthetic pathways.NADPHActivated carrier closely related to NADH and used as anelectron donor in biosynthetic pathways. In the process it isoxidized to NADP + .Nernst equationAn equation that relates the concentrations of an inorganicion on the two sides of a permeable membrane to themembrane potential at which there would be no netmovement of the ion across the membrane.nerve terminalStructure at the end of an axon that signals to anotherneuron or target cell.neuronAn electrically excitable cell that integrates and transmitsinformation as part of the nervous system; a nerve cell.neurotransmitterSmall signaling molecule secreted by a nerve cell at asynapse to transmit information to a postsynaptic cell.Examples include acetylcholine, glutamate, GABA, andglycine.nitric oxide (NO)Locally acting gaseous signal molecule that diffusesacross cell membranes to affect the activity of intracellularproteins.nitrogen fixationConversion of nitrogen gas from the atmosphere intonitrogen-containing molecules by soil bacteria andcyanobacteria; requires a great deal of energy.noncovalent bondChemical association that does not involve the sharingof electrons; singly they are relatively weak, but they cansum together to produce strong, highly specific interactionsbetween molecules. Examples are hydrogen bonds and vander Waals attractions.nonhomologous end joiningAn error-prone mechanism for repairing double-strandbreaks in DNA by rejoining the two broken ends; oftenresults in a loss of information at the site of repair.nuclear envelopeDouble membrane surrounding the nucleus. Consists ofouter and inner membranes, perforated by nuclear pores.nuclear laminaFibrous layer on the inner surface of the inner nuclearmembrane formed as a network of intermediate filamentsmade from nuclear lamins.nuclear magnetic resonance (NMR) spectroscopyTechnique used for determining the three-dimensionalstructure of a protein in solution.nuclear poreChannel through which selected largemolecules move between the nucleusand the cytoplasm.nuclear receptorProtein inside a eukaryotic cell that, on binding to a signalmolecule, enters the nucleus and regulates transcription.nucleolusLarge structure within the nucleus where ribosomal RNA istranscribed and ribosomal subunits are assembled.nucleosomeBeadlike structural unit of a eukaryotic chromosomecomposed of a short length of DNA wrapped around anoctameric core of histone proteins; includes a nucleosomalcore particle (DNA plus histone protein) along with asegment of linker DNA that ties the core particles together.nucleotideBasic building block of the nucleic acids, DNA and RNA; anucleoside linked to a phosphate.nucleusIn biology, refers to the prominent, rounded structure thatcontains the DNA of a eukaryotic cell. In chemistry, refers tothe dense, positively charged center of an atom.Okazaki fragmentShort length of DNA, including an RNA primer, produced onthe lagging strand during DNA replication. Following primerremoval, adjacent fragments are rapidly joined together byDNA ligase to form a continuous DNA strand.oncogeneA gene that, when activated, can potentially make a cellcancerous. Typically a mutant form of a normal gene (protooncogene)involved in the control of cell growth or division.open reading frame (ORF)Long sequence of nucleotides that contains no stop codon;used to identify potential protein-coding sequences in DNA.optogeneticsTechnique that uses light to control the activity of neuronsinto which light-gated ion channels have been artificiallyintroduced.organelleA discrete structure or subcompartment of a eukaryoticcell that is specialized to carry out a particular function.Examples include mitochondria and the Golgi apparatus.organic moleculeChemical compound that contains carbon and hydrogen.organoidA miniature, three-dimensional collection of tissues formedfrom the proliferation, differentiation, and self-assembly ofpluripotent cells in culture.osmosisPassive movement of water across a cell membrane froma region where the concentration of water is high (becausethe concentration of solutes is low) to a region where theconcentration of water is low (and the concentration ofsolutes is high).oxidationRemoval of electrons from an atom, as occurs during theaddition of oxygen to a carbon atom or when a hydrogenis removed from a carbon atom; can also refer to a partialshift of electrons between atoms linked by a covalent bond.
Glossary G:13oxidative phosphorylationMembrane-based process in bacteria and mitochondria inwhich ATP formation is driven by the transfer of electronsfrom food molecules to molecular oxygen.p53Transcription regulator that controls the cell’s response toDNA damage, preventing the cell from entering S phaseuntil the damage has been repaired or inducing the cell tocommit suicide if the damage is too extensive; mutations inthe gene encoding this protein are found in many humancancers.pairingIn meiosis, the process by which a pair of duplicatedhomologous chromosomes attach to one another to form astructure containing four sister chromatids.passive transportThe spontaneous movement of a solute down itsconcentration gradient across a cell membrane via amembrane transport protein, such as a channel or atransporter.patch-clamp recordingTechnique used to monitor the activity of ion channels in amembrane; involves the formation of a tight seal betweenthe tip of a glass electrode and a small region of cellmembrane, and manipulation of the membrane potentialby varying the concentrations of ions in the electrode.pedigreeChart showing the line of descent, or ancestry, of anindividual organism.peptide bondCovalent chemical bond between thecarbonyl group of one amino acid and theamino group of a second amino acid. (SeePanel 2–6, pp. 76–77.)peroxisomeSmall membrane-enclosed organelle that contains enzymesthat degrade lipids and destroy toxins.pH scaleConcentration of hydrogen ions in a solution, expressedas a logarithm. An acidic solution with pH 3 will contain10 –3 M hydrogen ions.phagocytic cellA cell such as a macrophage or neutrophil that is specializedto take up particles and microorganisms by phagocytosis.phagocytosisThe process by which particulate material is engulfed(“eaten”) by a cell. Prominent in predatory cells, such asAmoeba proteus, and in cells of the vertebrate immunesystem, such as macrophages.phenotypeThe observable characteristics of a cell or organism.phosphatidylcholineCommon phospholipid present in abundance in most cellmembranes; uses choline attached to a phosphate as itshead group.phosphoinositide 3-kinase (PI 3-kinase)Enzyme that phosphorylates inositol phospholipids inthe plasma membrane, which generates docking sites forintracellular signaling proteins that promote cell growthand survival.phospholipase CEnzyme associated with the plasma membrane thatgenerates two small messenger molecules in response toactivation.OCNHphospholipidA major type of lipid molecule in many cellmembranes. Generally composed of two fattyacid tails linked to one of a variety of phosphatecontainingpolar groups.photosynthesisThe process by which plants, algae, and some bacteriause the energy of sunlight to drive the synthesis of organicmolecules from carbon dioxide and water.photosystemLarge multiprotein complex containing chlorophyll thatcaptures light energy and converts it into chemical-bondenergy; consists of a set of antenna complexes and areaction center.phragmoplastIn a dividing plant cell, structure made of microtubules andmembrane vesicles that guides the formation of a new cellwall.phylogenetic treeDiagram or “family tree” showing the evolutionaryrelationships among groups of organisms or proteins.pinocytosisType of endocytosis in which soluble materials are takenup from the environment and incorporated into vesicles fordigestion. (Literally, “cell drinking.”)plasma membraneThe protein-containing lipid bilayer that surrounds a livingcell.plasmidSmall, circular DNA molecule that replicates independentlyof the genome. Used extensively as a vector for DNAcloning.plasmodesma (plural plasmodesmata)Cell–cell junction that connects one plant cell to the next;consists of a channel of cytoplasm lined by membrane.pluripotentCapable of giving rise to any type of cell or tissue.point mutationChange in a single nucleotide pair in a DNA sequence.polarIn chemistry, describes a molecule or bond in whichelectrons are distributed unevenly.polarityAn inherent asymmetry that allows one end of an objectto be distinguished from another; can refer to a molecule,a polymer (such as an actin filament), or even a cell (forexample, an epithelial cell that lines the mammalian smallintestine).polyadenylationThe addition of multiple adenine nucleotides to the 3′ end ofa newly synthesized mRNA molecule.polymerLong molecule made by covalently linking multiple identicalor similar subunits (monomers).polymerase chain reaction (PCR)Technique for amplifying selected regions of DNA bymultiple cycles of DNA synthesis; can produce billions ofcopies of a given sequence in a matter of hours.polymorphismDNA sequence for which two or more variants are presentat high frequency in the general population.polypeptide backboneRepeating sequence of the atoms (–N–C–C–) that form the
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- Page 805 and 806: Answers A:37in their reduced form.
- Page 807 and 808: Answers A:39D. Prokaryotic cells do
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- Page 813 and 814: Answers A:45becomes localized by bi
- Page 815 and 816: Answers A:47ANSWER 18-3 For multice
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- Page 823 and 824: Answers A:55ANSWER 20-9A. False. Ga
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- Page 829 and 830: Glossary G:5cyclic AMPSmall intrace
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- Page 839 and 840: Glossary G:15as a molecular marker
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- Page 843 and 844: IndexNote: The index covers the tex
- Page 845 and 846: IndexI:3BB lymphocytes/B cells 140F
- Page 847 and 848: IndexI:5internal membranes 19, 365-
- Page 849 and 850: IndexI:7cultured cell types 285cult
- Page 851 and 852: IndexI:9endosomes 497-500, 507, 511
- Page 853 and 854: IndexI:11familial hypertrophiccardi
- Page 855 and 856: IndexI:13integrases 319integrinsin
- Page 857 and 858: IndexI:15mitochondrial DNA 17, 245,
- Page 859 and 860: IndexI:17oxaloacetate 110F, 142, 43
- Page 861 and 862: IndexI:19pyrophosphate (PP i) 111,
- Page 863 and 864: IndexI:21spindle poles 627F, 629F,
- Page 865: IndexI:23water-splitting enzyme (ph
G:12 Glossary
N-terminus
The end of a polypeptide chain that carries a free α-amino
group.
Na + pump (or Na + -K + ATPase)
Transporter found in the plasma membrane of most animal
cells that actively pumps Na + out of the cell and K + in using
the energy derived from ATP hydrolysis.
NAD +
A molecule that accepts a hydride ion (H – ) from a donor
molecule, thereby producing the activated carrier NADH.
Widely used in the energy-producing breakdown of sugar
molecules. (See Figure 3–34.)
NADH
Activated carrier of electrons that is widely used in the
energy-producing breakdown of sugar molecules. (See
Figure 3–34.)
NADP +
Molecule that accepts a hydride ion (H – ) from a donor
molecule, thereby producing the activated carrier NADPH;
widely used as an electron donor in biosynthetic pathways.
NADPH
Activated carrier closely related to NADH and used as an
electron donor in biosynthetic pathways. In the process it is
oxidized to NADP + .
Nernst equation
An equation that relates the concentrations of an inorganic
ion on the two sides of a permeable membrane to the
membrane potential at which there would be no net
movement of the ion across the membrane.
nerve terminal
Structure at the end of an axon that signals to another
neuron or target cell.
neuron
An electrically excitable cell that integrates and transmits
information as part of the nervous system; a nerve cell.
neurotransmitter
Small signaling molecule secreted by a nerve cell at a
synapse to transmit information to a postsynaptic cell.
Examples include acetylcholine, glutamate, GABA, and
glycine.
nitric oxide (NO)
Locally acting gaseous signal molecule that diffuses
across cell membranes to affect the activity of intracellular
proteins.
nitrogen fixation
Conversion of nitrogen gas from the atmosphere into
nitrogen-containing molecules by soil bacteria and
cyanobacteria; requires a great deal of energy.
noncovalent bond
Chemical association that does not involve the sharing
of electrons; singly they are relatively weak, but they can
sum together to produce strong, highly specific interactions
between molecules. Examples are hydrogen bonds and van
der Waals attractions.
nonhomologous end joining
An error-prone mechanism for repairing double-strand
breaks in DNA by rejoining the two broken ends; often
results in a loss of information at the site of repair.
nuclear envelope
Double membrane surrounding the nucleus. Consists of
outer and inner membranes, perforated by nuclear pores.
nuclear lamina
Fibrous layer on the inner surface of the inner nuclear
membrane formed as a network of intermediate filaments
made from nuclear lamins.
nuclear magnetic resonance (NMR) spectroscopy
Technique used for determining the three-dimensional
structure of a protein in solution.
nuclear pore
Channel through which selected large
molecules move between the nucleus
and the cytoplasm.
nuclear receptor
Protein inside a eukaryotic cell that, on binding to a signal
molecule, enters the nucleus and regulates transcription.
nucleolus
Large structure within the nucleus where ribosomal RNA is
transcribed and ribosomal subunits are assembled.
nucleosome
Beadlike structural unit of a eukaryotic chromosome
composed of a short length of DNA wrapped around an
octameric core of histone proteins; includes a nucleosomal
core particle (DNA plus histone protein) along with a
segment of linker DNA that ties the core particles together.
nucleotide
Basic building block of the nucleic acids, DNA and RNA; a
nucleoside linked to a phosphate.
nucleus
In biology, refers to the prominent, rounded structure that
contains the DNA of a eukaryotic cell. In chemistry, refers to
the dense, positively charged center of an atom.
Okazaki fragment
Short length of DNA, including an RNA primer, produced on
the lagging strand during DNA replication. Following primer
removal, adjacent fragments are rapidly joined together by
DNA ligase to form a continuous DNA strand.
oncogene
A gene that, when activated, can potentially make a cell
cancerous. Typically a mutant form of a normal gene (protooncogene)
involved in the control of cell growth or division.
open reading frame (ORF)
Long sequence of nucleotides that contains no stop codon;
used to identify potential protein-coding sequences in DNA.
optogenetics
Technique that uses light to control the activity of neurons
into which light-gated ion channels have been artificially
introduced.
organelle
A discrete structure or subcompartment of a eukaryotic
cell that is specialized to carry out a particular function.
Examples include mitochondria and the Golgi apparatus.
organic molecule
Chemical compound that contains carbon and hydrogen.
organoid
A miniature, three-dimensional collection of tissues formed
from the proliferation, differentiation, and self-assembly of
pluripotent cells in culture.
osmosis
Passive movement of water across a cell membrane from
a region where the concentration of water is high (because
the concentration of solutes is low) to a region where the
concentration of water is low (and the concentration of
solutes is high).
oxidation
Removal of electrons from an atom, as occurs during the
addition of oxygen to a carbon atom or when a hydrogen
is removed from a carbon atom; can also refer to a partial
shift of electrons between atoms linked by a covalent bond.