Essential Cell Biology 5th edition
528 CHAPTER 15 Intracellular Compartments and Protein TransportFigure 15–37 Materials destined fordegradation in lysosomes follow differentpathways to the lysosome. Each pathwayleads to the intracellular digestion ofmaterials derived from a different source.Early endosomes, phagosomes, andautophagosomes can fuse with eitherlysosomes or late endosomes, both of whichcontain acid-dependent hydrolytic enzymes.Where the membrane fragments that formthe autophagosome originate is still activelyinvestigated.bacteriumearly endosomePHAGOCYTOSISphagosomehydrolytic enzymesENDOCYTOSISlateendosomelysosomesautophagosomeAUTOPHAGYmitochondrionsorted and packaged into transport vesicles, which bud off and delivertheir contents to lysosomes via endosomes (see Figure 15–19).Depending on their source, ECB5 materials e15.36/15.37 follow different paths to lysosomes.We have seen that extracellular particles are taken up into phagosomes,which fuse with lysosomes, and that extracellular fluid and macromoleculesare taken up into smaller endocytic vesicles, which deliver theircontents to lysosomes via endosomes.Cells have an additional pathway that supplies materials to lysosomes;this pathway, called autophagy, is used to degrade obsolete parts of thecell: as the term suggests, the cell literally eats itself. In electron micrographsof liver cells, for example, one often sees lysosomes digestingmitochondria, as well as other organelles. The process involves theenclosure of the organelle by a double membrane, creating an autophagosome,which then fuses with a lysosome (Figure 15–37). Autophagyof organelles and cytosolic proteins—some of which are marked fordestruction by the attachment of ubiquitin tags (as discussed in Chapter4)—increases when eukaryotic cells are starved or when they remodelthemselves extensively during development. The amino acids generatedby this cannibalistic form of digestion can then be recycled to allow continuedprotein synthesis.ESSENTIAL CONCEPTS• Eukaryotic cells contain many membrane-enclosed organelles,including a nucleus, an endoplasmic reticulum (ER), a Golgi apparatus,lysosomes, endosomes, mitochondria, chloroplasts (in plantcells), and peroxisomes. The ER, Golgi apparatus, peroxisomes,endosomes, and lysosomes are all part of the endomembrane system.• Most organelle proteins are made in the cytosol and transported intothe organelle where they function. Sorting signals in the amino acidsequence guide the proteins to the correct organelle; proteins thatfunction in the cytosol have no such signals and remain where theyare made.
Essential Concepts529• Nuclear proteins contain nuclear localization signals that helpdirect their active transport from the cytosol into the nucleusthrough nuclear pores, which penetrate the double membrane of thenuclear envelope. The proteins are transported in their fully foldedconformation.• Most mitochondrial and chloroplast proteins are made in the cytosoland are then transported into the organelles by protein translocatorsin their membranes. The proteins are unfolded during the transportprocess.• The ER makes most of the cell’s lipids and many of its proteins. Theproteins are made by ribosomes that are directed to the ER by asignal-recognition particle (SRP) in the cytosol that recognizes an ERsignal sequence on the growing polypeptide chain. The ribosome–SRP complex binds to a receptor on the ER membrane, which passesthe ribosome to a protein translocator that threads the growing polypeptideacross the ER membrane.• Water-soluble proteins destined for secretion or for the lumen of anorganelle of the endomembrane system pass completely into theER lumen, while transmembrane proteins destined for either themembrane of these organelles or for the plasma membrane remainanchored in the lipid bilayer by one or more membrane-spanningα helices.• In the ER lumen, proteins fold up, assemble with their proteinpartners, form disulfide bonds, and become decorated with oligosaccharidechains.• Exit from the ER is an important quality-control step; proteins thateither fail to fold properly or fail to assemble with their normal partnersare retained in the ER by chaperone proteins, which preventtheir aggregation and help them fold; proteins that still fail to fold orassemble are transported to the cytosol, where they are degraded.• Excessive accumulation of misfolded proteins triggers an unfoldedprotein response that expands the ER, increases its capacity to foldnew proteins properly, and reduces protein synthesis.• Protein transport from the ER to the Golgi apparatus and from theGolgi apparatus to other destinations is mediated by transport vesiclesthat continually bud off from one membrane and fuse withanother, a process called vesicular transport.• Budding transport vesicles have distinctive coat proteins on theircytosolic surface; the assembly of the coat helps drive both the buddingprocess and the incorporation of cargo receptors, with theirbound cargo molecules, into the forming vesicle.• Coated vesicles rapidly lose their protein coat, enabling them to dockand then fuse with a particular target membrane; docking and fusionare mediated by proteins on the surface of the vesicle and targetmembrane, including Rab, tethering, and SNARE proteins.• The Golgi apparatus receives newly made proteins from the ER; itmodifies their oligosaccharides, sorts the proteins, and dispatchesthem from the trans Golgi network to the plasma membrane,lysosomes (via endosomes), or secretory vesicles.• In all eukaryotic cells, transport vesicles continually bud from thetrans Golgi network and fuse with the plasma membrane; this processof constitutive exocytosis delivers proteins to the cell surfacefor secretion and incorporates lipids and proteins into the plasmamembrane.• Specialized secretory cells also have a regulated exocytosis pathway,in which molecules concentrated and stored in secretory vesiclesare released from the cell by exocytosis when the cell is signaled tosecrete.
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Essential Concepts
529
• Nuclear proteins contain nuclear localization signals that help
direct their active transport from the cytosol into the nucleus
through nuclear pores, which penetrate the double membrane of the
nuclear envelope. The proteins are transported in their fully folded
conformation.
• Most mitochondrial and chloroplast proteins are made in the cytosol
and are then transported into the organelles by protein translocators
in their membranes. The proteins are unfolded during the transport
process.
• The ER makes most of the cell’s lipids and many of its proteins. The
proteins are made by ribosomes that are directed to the ER by a
signal-recognition particle (SRP) in the cytosol that recognizes an ER
signal sequence on the growing polypeptide chain. The ribosome–
SRP complex binds to a receptor on the ER membrane, which passes
the ribosome to a protein translocator that threads the growing polypeptide
across the ER membrane.
• Water-soluble proteins destined for secretion or for the lumen of an
organelle of the endomembrane system pass completely into the
ER lumen, while transmembrane proteins destined for either the
membrane of these organelles or for the plasma membrane remain
anchored in the lipid bilayer by one or more membrane-spanning
α helices.
• In the ER lumen, proteins fold up, assemble with their protein
partners, form disulfide bonds, and become decorated with oligosaccharide
chains.
• Exit from the ER is an important quality-control step; proteins that
either fail to fold properly or fail to assemble with their normal partners
are retained in the ER by chaperone proteins, which prevent
their aggregation and help them fold; proteins that still fail to fold or
assemble are transported to the cytosol, where they are degraded.
• Excessive accumulation of misfolded proteins triggers an unfolded
protein response that expands the ER, increases its capacity to fold
new proteins properly, and reduces protein synthesis.
• Protein transport from the ER to the Golgi apparatus and from the
Golgi apparatus to other destinations is mediated by transport vesicles
that continually bud off from one membrane and fuse with
another, a process called vesicular transport.
• Budding transport vesicles have distinctive coat proteins on their
cytosolic surface; the assembly of the coat helps drive both the budding
process and the incorporation of cargo receptors, with their
bound cargo molecules, into the forming vesicle.
• Coated vesicles rapidly lose their protein coat, enabling them to dock
and then fuse with a particular target membrane; docking and fusion
are mediated by proteins on the surface of the vesicle and target
membrane, including Rab, tethering, and SNARE proteins.
• The Golgi apparatus receives newly made proteins from the ER; it
modifies their oligosaccharides, sorts the proteins, and dispatches
them from the trans Golgi network to the plasma membrane,
lysosomes (via endosomes), or secretory vesicles.
• In all eukaryotic cells, transport vesicles continually bud from the
trans Golgi network and fuse with the plasma membrane; this process
of constitutive exocytosis delivers proteins to the cell surface
for secretion and incorporates lipids and proteins into the plasma
membrane.
• Specialized secretory cells also have a regulated exocytosis pathway,
in which molecules concentrated and stored in secretory vesicles
are released from the cell by exocytosis when the cell is signaled to
secrete.