Essential Cell Biology 5th edition

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356 CHAPTER 10 Analyzing the Structure and Function of Genesreplaced by the altered one. In this way, the function of the mutant proteincan be analyzed in the absence of the normal protein. A common wayof doing this in mice makes use of cultured mouse embryonic stem (ES)cells (discussed in Chapter 20). These cells are first subjected to targetedgene replacement before being transplanted into a developing embryo toproduce a mutant mouse, as illustrated in Figure 10–28.Using a similar strategy, the activities of both copies of a gene can beeliminated entirely, creating a “gene knockout.” To do this, one caneither introduce an inactive, mutant version of the gene into cultured EScells or delete the gene altogether. The ability to use ES cells to producesuch “knockout mice” revolutionized the study of gene function, and the(A)ES cells growingin culture(B)pregnant mousealtered versionof target geneconstructed bygeneticengineeringINTRODUCE A DNAFRAGMENT CONTAININGALTERED GENE INTOMANY CELLSLET EACH ES CELLPROLIFERATE TOFORM A COLONYINJECT ALTEREDES CELLSINTO EARLYEMBRYOISOLATE EARLYEMBRYOFigure 10–28 Targeted gene replacementin mice utilizes embryonic stem (ES)cells. (A) First, an altered version of thegene is introduced into cultured ES cells.In a few rare ES cells, the altered gene willreplace the corresponding normal genethrough homologous recombination (asdescribed in Chapter 6, pp. 220−222 andFigure 6−31). Although the procedure isoften laborious, these rare cells can beidentified and cultured to produce manydescendants, each of which carries analtered gene in place of one of its twonormal corresponding genes. (B) Next, thealtered ES cells are injected into a very earlymouse embryo; the cells are incorporatedinto the growing embryo, which thendevelops into a mouse that contains somesomatic cells (colored orange) that carry thealtered gene. Some of these mice may alsohave germ-line cells that contain the alteredgene; when bred with a normal mouse,some of the progeny of these mice willcontain the altered gene in all of their cells.Such a mouse is called a “knock-in” mouse.If two such mice are bred, one can obtainprogeny that contain two copies of thealtered gene—one on each chromosome—in all of their cells.TAKE CELLS FROM THERARE COLONY IN WHICHTHE DNA FRAGMENTHAS REPLACED ONECOPY OF THENORMAL GENEES cells with one copy of targetgene replaced by altered genesome of theseoffspring havegerm-line cellscontaining altered genethe offspring willinclude males andfemales with one copyof target genealtered in all cellsEARLY EMBRYO FORMEDPARTLY FROM ALTEREDES CELLSINTRODUCE EARLYEMBRYO INTOPSEUDOPREGNANTMOUSEBIRTHMATE WITHNORMAL MOUSEMATINGTRANSGENIC MOUSEIN WHICH BOTH COPIES OFTARGET GENE ARE ALTERED

Exploring Gene Function357(A)(B)Figure 10–29 Transgenic mice with a mutant DNA helicase show prematureaging. The helicase, encoded by the Xpd gene, is involved in both transcriptionand DNA repair. Compared with a wild-type mouse (A), a transgenic mouse thatexpresses a defective version of Xpd (B) exhibits many of the symptoms of prematureaging, including osteoporosis, emaciation, early graying, infertility, and reduced lifespan.The mutation in Xpd used here impairs the activity of the helicase and mimicsECB5 e10.36/10.29a human mutation that causes trichothiodystrophy, a disorder characterized by brittlehair, skeletal abnormalities, and a greatly reduced life expectancy. These resultssupport the hypothesis that an accumulation of DNA damage contributes to theaging process in both humans and mice. (From J. de Boer et al., Science 296:1276–1279, 2002. With permission from AAAS.)technique is now being used to systematically determine the function ofevery mouse gene (Figure 10–29).A variation of this technique can be used to produce conditional knockoutmice, in which a known gene can be disrupted more selectively—only ina particular cell type or at a certain time in development. The strategyinvolves the introduction of an enzyme, called a recombinase, that canbe directed to selectively excise—and thus disable—a gene of interest(Figure 10−30). Such conditional knockouts are useful for studying geneswith a critical function during development, because mice missing thesecrucial genes often die before birth.IN NON-TARGET TISSUES (e.g., MUSCLE), THE GENE OF INTEREST IS EXPRESSED NORMALLYCre recombinase geneLoxP sitegene of interestLoxP siteliver-specific promoterINACTIVEIN TARGET TISSUE (e.g., LIVER), THE GENE OF INTEREST IS DELETEDliver-specific promoterACTIVEGENE OFFGENE ONgene of interest removedfrom chromosome andlost as cells divideCre recombinase madeonly in liver cellsGENE ONaltered chromosomeGENE OFFprotein ofinterestCre RECOMBINASEBINDS TO LoxP SITESCre CATALYZESRECOMBINATIONBETWEEN LoxP SITESFigure 10–30 In conditional knockouts,a gene can be selectively disabled in aparticular target tissue. The approachrequires the insertion of two engineeredsegments of DNA into an animal’s germ-linecells. The first contains the gene encoding arecombinase (in this case, Cre recombinase)that is under the control of a tissue-specificpromoter. This promoter ensures thatrecombinase will be produced only in thetarget tissue. The second DNA moleculecontains the gene of interest flanked bynucleotide sequences (in this case, LoxPrecombination sites) that are recognized bythe recombinase. The mouse is engineeredso that this version of the gene of interest isthe only copy the animal has.In non-target tissues, no recombinase willbe produced and the gene of interest willbe expressed normally. In the target tissue,however, the tissue-specific promoter willbe activated, allowing the recombinase tobe produced. The enzyme will then bind tothe LoxP sites and catalyze a recombinationreaction that will excise the gene ofinterest—thus disabling it specifically in thetarget tissue.

356 CHAPTER 10 Analyzing the Structure and Function of Genes

replaced by the altered one. In this way, the function of the mutant protein

can be analyzed in the absence of the normal protein. A common way

of doing this in mice makes use of cultured mouse embryonic stem (ES)

cells (discussed in Chapter 20). These cells are first subjected to targeted

gene replacement before being transplanted into a developing embryo to

produce a mutant mouse, as illustrated in Figure 10–28.

Using a similar strategy, the activities of both copies of a gene can be

eliminated entirely, creating a “gene knockout.” To do this, one can

either introduce an inactive, mutant version of the gene into cultured ES

cells or delete the gene altogether. The ability to use ES cells to produce

such “knockout mice” revolutionized the study of gene function, and the

(A)

ES cells growing

in culture

(B)

pregnant mouse

altered version

of target gene

constructed by

genetic

engineering

INTRODUCE A DNA

FRAGMENT CONTAINING

ALTERED GENE INTO

MANY CELLS

LET EACH ES CELL

PROLIFERATE TO

FORM A COLONY

INJECT ALTERED

ES CELLS

INTO EARLY

EMBRYO

ISOLATE EARLY

EMBRYO

Figure 10–28 Targeted gene replacement

in mice utilizes embryonic stem (ES)

cells. (A) First, an altered version of the

gene is introduced into cultured ES cells.

In a few rare ES cells, the altered gene will

replace the corresponding normal gene

through homologous recombination (as

described in Chapter 6, pp. 220−222 and

Figure 6−31). Although the procedure is

often laborious, these rare cells can be

identified and cultured to produce many

descendants, each of which carries an

altered gene in place of one of its two

normal corresponding genes. (B) Next, the

altered ES cells are injected into a very early

mouse embryo; the cells are incorporated

into the growing embryo, which then

develops into a mouse that contains some

somatic cells (colored orange) that carry the

altered gene. Some of these mice may also

have germ-line cells that contain the altered

gene; when bred with a normal mouse,

some of the progeny of these mice will

contain the altered gene in all of their cells.

Such a mouse is called a “knock-in” mouse.

If two such mice are bred, one can obtain

progeny that contain two copies of the

altered gene—one on each chromosome—

in all of their cells.

TAKE CELLS FROM THE

RARE COLONY IN WHICH

THE DNA FRAGMENT

HAS REPLACED ONE

COPY OF THE

NORMAL GENE

ES cells with one copy of target

gene replaced by altered gene

some of these

offspring have

germ-line cells

containing altered gene

the offspring will

include males and

females with one copy

of target gene

altered in all cells

EARLY EMBRYO FORMED

PARTLY FROM ALTERED

ES CELLS

INTRODUCE EARLY

EMBRYO INTO

PSEUDOPREGNANT

MOUSE

BIRTH

MATE WITH

NORMAL MOUSE

MATING

TRANSGENIC MOUSE

IN WHICH BOTH COPIES OF

TARGET GENE ARE ALTERED

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