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Semrock Master Catalog 2018

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The Physics of Pixel Shift<br />

Pixel shift refers to the shift of a<br />

microscope image that can occur when<br />

switching between fluorescence filter<br />

cubes. This is undesirable because<br />

the individual images obtained with<br />

these cubes do not overlap precisely<br />

with each other, causing issues in the<br />

analysis and understanding of the<br />

image data. This white paper explains<br />

the optical physics behind pixel shift,<br />

and outlines some key considerations<br />

in the design of optical filter sets with<br />

“zero pixel shift” (less than one pixel<br />

error) performance.<br />

Pixel Shift in Fluorescence<br />

Microscopy<br />

Multicolor imaging in fluorescence<br />

microscopy is typically performed by<br />

acquiring sequential images at different<br />

emission wavelengths, and overlaying<br />

these images to study the spatial<br />

distribution of cellular components.<br />

Imaging artifacts such as “pixel shift”<br />

can compromise the extent to which<br />

such a composite image correctly<br />

represents the biological phenomena.<br />

This white paper discusses pixel shift<br />

in the context of multicolor imaging,<br />

how these shifts can be mitigated,<br />

and which types of multicolor<br />

imaging can be used to improve<br />

microscopy performance.<br />

Practical Aspects of<br />

Mirror Usage in Optical<br />

Systems for Biology<br />

Multimodal NLO Imaging<br />

Nonlinear optical (NLO) imaging is<br />

a powerful microscopy technique<br />

in the field of biomedical optics, in<br />

which ultrafast laser excitation is used<br />

to exploit several nonlinear optical<br />

effects that can provide high-contrast<br />

imaging of biological samples. This<br />

white paper discusses the emergence<br />

of NLO imaging and how it has been<br />

facilitated by advances in three key<br />

technology areas: ultrafast lasers;<br />

high-performance, hard-coated optical<br />

filters; and high-sensitivity detectors.<br />

Fluorophores commonly used in<br />

combination with NLO fluorescence<br />

imaging are also discussed.<br />

Understanding Polarization<br />

Despite its importance for many optical<br />

systems and applications, polarization<br />

is often considered a more esoteric<br />

property of light that is not so well<br />

understood. In this article our aim is to<br />

answer some basic questions about the<br />

polarization of light, including: what<br />

polarization is and how it is described,<br />

how it is controlled by optical<br />

components, and when it matters in<br />

optical systems.<br />

How to Calculate<br />

Luminosity, Dominant<br />

Wavelength, and<br />

Excitation Purity<br />

This article provides a brief overview<br />

of a simple, clear, and unambiguous<br />

method for calculating the color an<br />

observer sees when looking through<br />

an optical filter at a well-defined<br />

light source using the CIE 1931 Color<br />

Specification System.<br />

Measurement of<br />

Optical Filter Spectra<br />

Due to limitations of standard<br />

metrology techniques, the measured<br />

spectral characteristics of thin-film<br />

interference filters are frequently not<br />

determined accurately, especially<br />

when there are steep edges and<br />

deep blocking. Use of the optimal<br />

measurement approach for a given<br />

filter or application can reduce errors<br />

in and overdesign of experiments and<br />

systems that use filters, thus optimizing<br />

performance, results, and cost.<br />

NIR Filters Mirrors Polarizers<br />

Edge<br />

Filters<br />

Dichroic<br />

Beamsplitters<br />

Laser-line<br />

Filters<br />

Laser Diode<br />

Filters<br />

Why are so many different models<br />

of mirrors found in biological optics<br />

setups, and how does one know<br />

which mirror to purchase for a specific<br />

purpose? This paper seeks to<br />

answer those questions, by providing<br />

practical, useful information on the<br />

now ubiquitous flat dielectric mirror.<br />

It also outlines some of the key design<br />

considerations and specifications<br />

to consider when selecting the<br />

appropriate flat mirror for an optical<br />

system used in biology.<br />

Notch<br />

Filters<br />

Lamp Clean-up<br />

Filters<br />

111<br />

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