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Mapping 250K/500K SNP assay

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Table 4.16<br />

PCR Master Mix<br />

ADD PCR MASTER MIX TO SAMPLES<br />

Location<br />

PCR Staging Area<br />

Procedure<br />

To add PCR Master Mix to samples:<br />

chapter 4 | 96-Well Plate Protocol 69<br />

Reagent For 1 Reaction For 3 PCR Plates<br />

(15% extra)<br />

AccuGENE® water 39.5 µL 13.082 mL<br />

TITANIUM Taq PCR Buffer (10X) 10 µL 3.312 mL<br />

GC-Melt (5M) 20 µL 6.624 mL<br />

dNTP (2.5 mM each) 14 µL 4.637 mL<br />

PCR Primer 002 (100 µM) 4.5 µL 1.490 mL<br />

TITANIUM Taq DNA Polymerase (50X) 2 µL 0.663 mL<br />

Total 90 µL 29.808 mL<br />

1. Using a 12-channel P200 pipette, add 90 µL PCR Master Mix to<br />

each sample.<br />

The total volume in each well is 100 µL.<br />

2. Seal each reaction plate tightly with adhesive film.<br />

3. Vortex the center of each reaction plate at high speed for 3 sec.<br />

4. Spin down the plates at 2000 rpm for 30 sec.<br />

5. Keep the reaction plates in cooling chambers on ice until loaded<br />

onto the thermal cyclers.

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