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Mapping 250K/500K SNP assay

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14 GeneChip ® <strong>Mapping</strong> <strong>500K</strong> Assay Manual<br />

42. Klein, R.J., Zeiss, C., Chew, E.Y., Tsai, J.Y., Sackler, R.S.,<br />

Haynes, C., Henning, A.K., Sangiovanni, J.P., Mane, S.M.,<br />

Mayne, S.T., Bracken, M.B., Ferris, F.L., Ott, J., Barnstable, C.,<br />

Hoh, J. Complement factor H polymorphism in age-related<br />

macular degeneration. Science 308:385-9 (2005).<br />

43. Serono Identifies 80 Genes Involved in Multiple Sclerosis Using<br />

100,000 <strong>SNP</strong>s. In: Affymetrix Microarray Bulletin; 2005; Issue 1: 1-<br />

4; www.microarraybulletin.com.<br />

44. Huang, J., Wei, W., Zhang, J., Liu, G., Bignell, G.R., Stratton,<br />

M.R., Futreal, P.A., Wooster, R., Jones, K. W., Shapero, M.H.<br />

Whole genome DNA copy number changes identified by high<br />

density oligonucleotide arrays. Hum Genomics 1:287-99 (2004).<br />

45. Nannya, Y., Sanada, M., Nakazaki, K., Hosoya, N., Wang, L.,<br />

Hangaishi, A., Kurokawa, M., Chiba, S., Bailey, D. K., Kennedy,<br />

G.C., Ogawa, S. A robust algorithm for copy number detection<br />

using high-density oligonucleotide single nucleotide<br />

polymorphism genotyping arrays. Cancer Res 65:6071-9 (2005).<br />

46. Wong, K.K., Tsang, Y.T., Shen, J., Cheng, R.S., Chang, Y.M.,<br />

Man, T.K., Lau, C.C. Allelic imbalance analysis by high-density<br />

single-nucleotide polymorphic allele (<strong>SNP</strong>) array with whole<br />

genome amplified DNA. Nucleic Acids Res 32:e69 (2004).<br />

47. Zhao, X., Li, C., Paez, J.G., Chin, K., Janne, P.A., Chen, T.H.,<br />

Girard, L., Minna, J., Christiani, D., Leo, C., Gray, J.W., Sellers,<br />

W.R., Meyerson, M. An integrated view of copy number and<br />

allelic alterations in the cancer genome using single nucleotide<br />

polymorphism arrays. Cancer Res 64:3060-71 (2004).<br />

48. Zhou, X., Mok, S.C., Chen, Z., Li, Y., Wong, D.T. Concurrent<br />

analysis of loss of heterozygosity (LOH) and copy number<br />

abnormality (CNA) for oral premalignancy progression using the<br />

Affymetrix 10K <strong>SNP</strong> mapping array. Hum Genet 115:327-30<br />

(2004).<br />

49. Rauch, A., Ruschendorf, F., Huang, J., Trautmann, U., Becker,<br />

C., Thiel, C., Jones, K.W., Reis, A., Nurnberg, P. Molecular<br />

karyotyping using an <strong>SNP</strong> array for genomewide genotyping. J<br />

Med Genet 41:916-22 (2004).

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