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Mapping 250K/500K SNP assay

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10 GeneChip ® <strong>Mapping</strong> <strong>500K</strong> Assay Manual<br />

Vilo, J., Kurg, A., Rice, K., Deloukas, P., Mott, R., Metspalu, A.,<br />

Bentley, D.R., Cardon, L.R., Dunham, I. A first-generation<br />

linkage disequilibrium map of human chromosome 22. Nature<br />

418:544-8 (2002).<br />

18. Phillips, M.S., Lawrence, R., Sachidanandam, R., Morris, A.P.,<br />

Balding, D.J., Donaldson, M.A., Studebaker, J.F., Ankener,<br />

W.M., Alfisi, S.V., Kuo, F.S., Camisa, A.L., Pazorov, V., Scott,<br />

K.E., Carey, B.J., Faith, J., Katari, G., Bhatti, H.A., Cyr, J.M.,<br />

Derohannessian, V., Elosua, C., Forman, A.M., Grecco, N.M.,<br />

Hock, C.R., Kuebler, J.M., Lathrop, J.A., Mockler, M.A.,<br />

Nachtman, E.P., Restine, S.L., Varde, S.A., Hozza, M.J., Gelfand,<br />

C.A., Broxholme, J., Abecasis, G.R., Boyce-Jacino, M.T., Cardon,<br />

L.R. Chromosome-wide distribution of haplotype blocks and the<br />

role of recombination hot spots. Nat Genet 33:382-7 (2003).<br />

19. Kennedy, G.C., Matsuzaki, H., Dong, S., Liu, W.M., Huang, J.,<br />

Liu, G., Su, X., Cao, M., Chen, W., Zhang, J., Liu, W., Yang, G.,<br />

Di, X., Ryder, T., He, Z., Surti, U., Phillips, M.S., Boyce-Jacino,<br />

M.T., Fodor, S.P., Jones, K.W. Large-scale genotyping of complex<br />

DNA. Nat Biotechnol 21:1233-7 (2003).<br />

20. Matsuzaki, H., Loi, H., Dong, S., Tsai, Y-Y., Fang, J., Law, J., Di,<br />

X., Liu, W-M., Yang, G., Liu, G., Huang, J., Kennedy, G.C.,<br />

Ryder, T.B., Marcus, G., Walsh, P.S., Shriver, M.D., Puck, J.M.,<br />

Jones, K.W., Mei, R. Parallel genotyping of over 10,000 <strong>SNP</strong>s<br />

using a one-primer <strong>assay</strong> on a high density oligonucleotide array.<br />

Genome Res 14:414-25 (2004).<br />

21. Sellick, G.S., Longman, C., Tolmie, J., Newbury-Ecob, R.,<br />

Geenhalgh, L., Hughes, S., Whiteford, M., Garrett, C., Houlston,<br />

R.S. Genomewide linkage searches for Mendelian disease loci can<br />

be efficiently conducted using high-density <strong>SNP</strong> genotyping<br />

arrays. Nucleic Acids Res 32:e164 (2004).<br />

22. John, S., Shephard, N., Liu, G., Zeggini, E., Cao, M., Chen, W.,<br />

Vasavda, N., Mills, T., Barton, A., Hinks, A., Eyre, S., Jones,<br />

K.W., Ollier, W., Silman, A., Gibson, N., Worthington, J.,<br />

Kennedy, G.C. Whole-genome scan, in a complex disease, using<br />

11,245 single-nucleotide polymorphisms: comparison with<br />

microsatellites. Am J Hum Genet 75:54-64 (2004).

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