KAPA SYBR® FAST qPCR Kit Master Mix (2X ... - Kapa Biosystems

KAPA SYBR ® FAST qPCR Kit
Master Mix (2X) Universal
KR0389 - v8.12
Product Description
KAPA SYBR ® FAST qPCR Master Mix is designed for
high performance real-time PCR. The kit contains a novel
DNA polymerase engineered via a process of molecular
evolution. The result is a unique enzyme, specifically
designed for qPCR using SYBR ® Green I dye chemistry.
KAPA SYBR ® DNA Polymerase has been engineered
to perform optimally in stringent real-time quantitative
PCR (qPCR) reaction conditions, exhibiting dramatic
improvements in signal-to-noise ratio (fluorescence),
quantification cycle (C q ), linearity, and sensitivity. The
KAPA SYBR ® DNA Polymerase and proprietary buffer
system improves the amplification efficiency of difficult
targets, including both GC- and AT-rich templates.
KAPA SYBR ® FAST qPCR Master Mix (2X) Universal is a
ready-to-use cocktail containing all components except
primers and template, for the amplification and detection
of DNA in qPCR. The KAPA SYBR ® FAST qPCR Kit is
supplied as a 2X Master Mix with integrated antibodymediated
hot start, SYBR ® Green I fluorescent dye, MgCl 2 ,
dNTPs and stabilizers. ROX reference dye is not included
in the 2X Master Mix but is supplied separately.
Product Applications
KAPA SYBR ® FAST qPCR Kits are ideally suited for:
• Gene expression analysis
• Low copy gene detection
• Absolute quantification of NGS libraries
Product Specifications
Shipping and Storage
Upon arrival, store kit components protected from light at
–20 °C in a constant-temperature freezer. When stored
under these conditions and handled correctly, the master
mix will retain full activity until the expiry date indicated on
the kit label.
Handling
Minimize exposure of the Master Mix (2X) to direct light.
Exposure to direct light for an extended period of time
may result in loss of fluorescent signal intensity. Always
ensure that the product has been fully thawed and mixed
before use.
Quality Control
KAPA SYBR ® FAST qPCR Master Mix (2X) is free of
contaminating DNase and RNase. It is functionally tested
by generating a standard curve with human genomic
DNA as template, with a dynamic range of 5 orders of
magnitude, a reaction efficiency of 90 - 110% and a
correlation coefficient >0.99.
Kit Codes and Components
KK4600
100 x 20 µl
reactions
KK4601
500 x 20 µl
reactions
KK4602
1000 x 20 µl
reactions
Quick Notes
Technical Data Sheet
KAPA SYBR ® FAST Master Mix (2X)
Universal
qPCR Master Mix (2X) - 1 x 1 ml
ROX Reference Dye High (50X) - 1 x 200 µl
ROX Reference Dye Low (50X) - 1 x 200 µl
KAPA SYBR ® FAST Master Mix (2X)
Universal
qPCR Master Mix (2X) - 1 x 5 ml
ROX Reference Dye High (50X) - 1 x 200 µl
ROX Reference Dye Low (50X) - 1 x 200 µl
KAPA SYBR ® FAST Master Mix (2X)
Universal
qPCR Master Mix (2X) - 2 x 5 ml
ROX Reference Dye High (50X) - 2 x 200 µl
ROX Reference Dye Low (50X) - 2 x 200 µl
• This kit contains an engineered enzyme optimized
for qPCR using SYBR ® Green I dye chemistry.
• The 2X Master Mix contains a proprietary buffer.
Together with the novel enzyme, this improves
amplification efficiency of both GC- and AT-rich
targets.
• 20 sec initial denaturation at 95 °C is sufficient for
enzyme activation. When working with complex
templates, an initial denaturation of 3 min is
recommended.
• For two-step cycling, use 20 sec combined
annealing/extension/data acquisition.
• Do not exceed 25 µl reaction volumes.
Instrument
ABI 5700, 7000, 7300, 7700, and
7900HT, StepOne, and StepOnePlus
ABI 7500, Stratagene Mx3000P ,
Mx3005P , Mx4000 , and ViiA 7
Rotor-Gene ; DNA Engine Opticon ,
Opticon 2, and Chromo 4 Real-Time
Detector; Mastercycler ® ep realplex,
Smart Cycler ® , Roche LightCycler ® 480,
Roche LightCycler ® Nano, Bio-Rad
CFX96, Illumina Eco
ROX
Reference Dye
ROX High
ROX Low
No ROX
1

KAPA SYBR ® FAST qPCR Kit
Master Mix (2X) Universal
KAPA SYBR ® FAST qPCR Protocol
Any existing qPCR assay performed efficiently using
standard cycling conditions may be converted to a
Fast qPCR assay with KAPA SYBR ® FAST qPCR Kits.
Typically, minimal re-optimization of reaction parameters
is required.
Step 1: Set up the qPCR reaction
• Ensure all reaction components are properly thawed
and mixed.
• Calculate the required volumes of each component
based on the following table:
*Final MgCl 2 concentration at 1X is 2.5 mM.
**The use of ROX dye is necessary for all Applied Biosystems
instruments and is optional for the Stratagene Mx3000P ,
Mx3005P , and Mx4000 cyclers. Bio-Rad/MJ Research,
Cepheid, Corbett/Qiagen, Eppendorf, Illumina and Roche
instruments do not require ROX dye.
• Prepare a PCR master mix consisting of the
appropriate volumes of KAPA SYBR ® FAST qPCR
Master Mix (2X), ROX (if applicable), PCR-grade
water and any other component (e.g. template
or primers) that is common to all or a subset of
the reactions to be performed. Ensure reaction
components are mixed properly.
Step 2: Set up the plate
• Transfer the appropriate volumes of PCR master mix,
template and primers to each well of a PCR tube/
plate.
• Cap or seal the reaction tube/plate and centrifuge
briefly.
2
Components
Final
concentration
Per 20 µl rxn
PCR-grade water - Up to 20 µl
KAPA SYBR ® FAST
qPCR Master Mix (2X)*
Universal
1X 10 μl
Forward Primer (10 µM) 200 nM 0.4 μl
Reverse Primer (10 µM) 200 nM 0.4 μl
Template DNA (

KAPA SYBR ® FAST qPCR Kit
Master Mix (2X) Universal
Important Parameters (continued)
Primers
Careful primer design and purification (HPLC-purified
primers are recommended) will minimize loss in
sensitivity due to nonspecific amplification. This effect
becomes more prominent at low target concentrations.
To maximize the sensitivity of the assay, use the lowest
primer concentration determined not to compromise
reaction efficiency (50 - 400 nM of each primer). For
optimal results, design primers that amplify PCR products
60 - 400 bp in length. Use appropriate primer design
software to design primers with a melting temperature (T m )
of approximately 60 °C, to take advantage of two-step
cycling. If performing qRT-PCR, we recommend designing
primers specifically for amplification of cDNA derived
from mRNA. This prevents amplification of contaminating
genomic DNA and inaccurate quantification of mRNA.
KAPA SYBR ® DNA Polymerase
KAPA SYBR ® DNA Polymerase is an engineered version of
Taq DNA polymerase, designed specifically for real-time
PCR using SYBR Green I chemistry. KAPA SYBR ® DNA
Polymerase displays no enzymatic activity at ambient
temperature. This prevents the formation of misprimed
products and primer-dimers during reaction setup, prior
to the first denaturation step, and results in high PCR
specificity and accurate quantification. The enzyme is
activated during the initial denaturation step of the PCR.
The activation of the enzyme is complete after 20 sec;
however, complex targets may require up to 3 min for
optimal denaturation. The hot start feature obviates the
need to cool reactions during setup.
ROX Reference Dye
For certain real-time cyclers, the presence of ROX
reference dye compensates for non-PCR–related
variations in fluorescence detection. The fluorescence
level of ROX reference dye does not change significantly
during the course of real-time PCR, but provides a
stable baseline against which PCR-related fluorescent
signals are normalized. Thus, ROX dye compensates for
differences in fluorescence detection between wells due
to slight variations in reaction volume or differences in
well position. The presence of ROX dye in the master mix
does not interfere with real-time PCR on any instrument,
since the dye is not involved in the reaction and has an
emission spectrum different from that of SYBR ® Green I.
SYBR ® Green I
KAPA SYBR ® FAST qPCR Master Mix (2X) contains an
elevated, optimized concentration of the fluorescent dye,
SYBR ® Green I. High signal intensities are achieved as
a result of increased tolerance to high concentrations
of SYBR ® Green I by the engineered KAPA SYBR ® DNA
Polymerase. SYBR ® Green I binds all double-stranded
DNA molecules, emitting a fluorescent signal on binding.
Magnesium chloride
The KAPA SYBR ® FAST qPCR Master Mix contains an
optimized MgCl 2 concentration. It is highly unlikely that
additional MgCl 2 will improve reaction efficiency or
specificity.
Note to Purchaser: Limited License
Technical Data Sheet
Certain applications of this product are covered by patents issued to
parties other than Kapa Biosystems and applicable in certain countries.
Purchase of this product does not include a license to perform any such
applications. Users of this product may therefore be required to obtain a
patent license depending upon the particular application and country in
which the product is used.
Use of this product is covered by one or more of the following US
patents and corresponding patent claims outside the US: 5,994,056,
6,171,785, and 5,928,907 (claim numbers 12-24, 27-28). The purchase
of this product includes a limited, non-transferable immunity from suit
under the foregoing patent claims for using only this amount of product
for the purchaser’s own internal research. No right under any other
patent claim (such as apparatus or system claims in US Patent No.
6,814,934) and no right to perform commercial services of any kind,
including without limitation reporting the results of purchaser’s activities
for a fee or other commercial consideration, is conveyed expressly,
by implication, or by estoppel. This product is for research use only.
Diagnostic uses under Roche patents require a separate license from
Roche. Further information on purchasing licenses may be obtained by
contacting the Director of Licensing, Applied Biosystems, 850 Lincoln
Centre Drive, Foster City, California 94404, USA.
This product is provided under an agreement between Life Technologies
Corporation. and Kapa Biosystems Inc., and the manufacture, use, sale
or import of this product is subject to one or more of U.S. Patent Nos.
5,436,134; 5,658,751 and corresponding international equivalents,
owned by Life Technologies Corporation. The purchase of this product
conveys to the buyer the non-transferable right to use the purchased
amount of the product and components of the product in research
conducted by the buyer, where such research does not include
testing, analysis or screening services for any third party in return for
compensation on a per test basis. The buyer cannot sell or otherwise
transfer (a) this product (b) its components or (c) materials made using
this product or its components to a third party or otherwise use this
product or its components or materials made using this product or its
components for Commercial Purposes. Commercial Purposes means
any activity by a party for consideration and may include, but is not
limited to: (1) use of the product or its components in manufacturing; (2)
use of the product or its components to provide a service, information,
or data; (3) use of the product or its components for therapeutic,
diagnostic or prophylactic purposes; or (4) resale of the product or
its components, whether or not such product or its components are
resold for use in research. For information on purchasing a license to
this product for purposes other than research, contact Life Technologies
Corporation, 5791 Van Allen Way, Carlsbad, CA 92008 USA or
outlicensing@lifetech.com.
Licensed under U.S. Patent nos. 5,338,671 and 5,587,287 and
corresponding patents in other countries.
The purchase of this product includes a limited, non-transferable license
under specific claims of U.S. Patent Nos. 6,174,670, 6,569,627 and
5,871,908, owned by the University of Utah Research Foundation or
Evotec Biosystems GmbH and licensed to Idaho Technology, Inc. and
Roche Diagnostics GmbH, to use only the enclosed amount of product
according to the specified protocols. No right is conveyed, expressly,
by implication, or by estoppel, to use any instrument or system under
any claim of U.S. Patent Nos. 6,174,670, 6,569,627 and 5,871,908,
other than for the amount of product contained herein.
SYBR ® is a registered trademark of Life Technologies Corporation.
PRISM ® , GeneAmp ® , ViiA , StepOne , and StepOnePlus are
trademarks or registered trademarks of Applera. iCycler ® , Mx3000P ,
Mx3005 , Mx4000 , Rotor-Gene , DNA Engine Opticon , Chromo 4 ,
LightCycler ® , Smart Cycler ® , and Eco are trademarks or registered
trademarks of their respective companies.
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KAPA SYBR ® FAST qPCR Kit
Master Mix (2X) Universal
Troubleshooting
For support please contact: support@kapabiosystems.com
4
Symptoms Possible Causes Solutions
Positive signal in no-template
control (NTC)
Presence of secondary,
nonspecific peak in melt
curve of sample
Reasons for a positive signal in a NTC
and/or nonspecific amplifcation are often due
to multiple factors that include:
1. Contamination
2. Primer-dimer formation due to:
• Incorrect cycling protocol
• Sub-optimal primer annealing temperature
(often due to differences between
qPCR systems)
• Primer and/or template degradation
(always store and dilute primers and
template in 10 mM Tris-HCl, pH 8.0 - 8.5
and not in PCR-grade water)
• Sub-optimal primer synthesis
• Sub-optimal primer design
Low fluorescence intensity Incorrect handling
Melting temperature of specific
product is different from
competitor kit
Incorrect concentration of ROX reference dye
Differences in the buffer composition (e.g. salt
concentration) of qPCR master mixes
Technical Data Sheet
Perform melt curve analysis (or run qPCR
products on a gel) to determine if the product
is specific or nonspecific (primer dimer).
If the NTC contains a specific product, the
assay is contaminated:
• Discard all reagents, clean all pipettes
and surfaces and prepare fresh stocks of
primer, etc.
Note: The increased sensitivity of KAPA
SYBR ® FAST qPCR Kits may result in the
detection of low levels of contamination in
assays considered contaminant-free when
using competitor kits containing wild-type Taq
DNA polymerase.
If the NTC and/or sample contains nonspecific
product, assay optimization may be required:
• 30 sec combined annealing/extension
time is recommended for most assays.
Longer times may result in nonspecific
amplification.
• Increase the combined annealing/
extension temperature in increments
of 3 ºC.
• Decrease primer concentration.
• Resynthesize or redesign primers. HPLC
purified primers are recommended for low
copy number detection, and often results
in reduced primer-dimer formation.
SYBR ® Green I dye is light sensitive; avoid
exposure to light and repeated freeze-thaw
cycles. Always thaw and mix solutions
thoroughly before use.
If the incorrect concentration of ROX reference
dye is added to the master mix, the normalized
signal may be lower than expected (if too much
ROX has been added), or higher than expected
(if too little ROX has been added). If using ABI
instrumentation, analysis of the raw signal
can always be performed with the ROX filter
switched off.
Differences in master mix formulation may effect
the melting temperature of the product slightly.
A particular DNA fragment will melt at a higher
temperature in a reaction buffer containing a
higher salt concentration.
Boston, Massachusetts, United States
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Email: sales@kapabiosystems.com
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Email: sales@kapabiosystems.com