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How different or similar are nematode communities - International ...
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Revision of Quarantine Nematodes Reported in Spain<br />
Escuer, M., S.C. Arcos, L. Robertson, M.A. Diez Rojo & A. Bello<br />
Dpto Agroecología, Instituto de Ciencias Agrarias, CCMA, CSIC, C/ Serrano 115 dpdo, Madrid, 28006, Spain<br />
In revising the quarantine status of nematodes in Spain, Ditylenchus dipsaci (Kühn, 1857)<br />
Filipjev, 1936 is widespread on many different crops, including garlic, onion, strawberry,<br />
sugarbeet, cereals and legumes. Reports from other crops and uncultivated areas should be<br />
reviewed. Globodera pallida (Stone, 1973) Berenhs, 1975 is present, the main pathotypes<br />
being Pa2/Pa3 and also Pa1 in Tenerife (Canary Islands). The pathotypes Ro1/Ro4 of G.<br />
rostochiensis (Wollenweber, 1923) Skarbilovich, 1959 occur throughout Galicia, La Rioja,<br />
Mallorca and Tenerife (Canary Islands). Xiphinema rivesi Dalmasso, 1969, a nematode vector<br />
of the Tomato Ring Spot Virus (TomRSV) in grapes in the USA, is widely distributed in the<br />
Spanish peninsula. Although cited, Ditylenchus destructor Thorne 1945; Nacobbus Thorne &<br />
Allen, 1944 and Xiphinema americanum Cobb, 1913 sensu stricto have not been found in<br />
Spain. However there are reports of X brevicollum Lordello & Dacosta, 1961, and X.<br />
pachtaicum (Tulaganov, 1938) Kirjanova, 1951 which are species belonging to the X.<br />
americanum-group. The other quarantine nematodes Aphelenchoides besseyi Christie, 1942;<br />
Bursaphelenchus xylophilus (Steiner & Buhere, 1934) Nickel et al., 1970, Heterodera glycines<br />
Ichinohe, 1952, Hirschmanniella Luc & Goodey, 1964, Longidorus diadecturus Eveliegh &<br />
Allen, 1982, Meloidogyne chitwoodi Golden et al., 1980, M. fallax Karssen, 1996, Nacobbus<br />
aberrans (Thorne, 1935) Thorne & Allen, 1944, Radopholus similis (Cobb,1893) Thorne 1949<br />
(syn.: R. citrophillus Huettel et al., 1984), Xiphinema bricolense Ebarsy et al., 1989, and X.<br />
californicum Lamberti & Bleve-Zacheo, 1979 have not been reported from Spain. Due to the<br />
importance of quarantine measures, an in-depth study of the distribution and epidemiology must<br />
be carried out to increase our knowledge on the existence of biotypes, their host range, and other<br />
plant pathogen interactions as in the case of D. dipsaci and X. rivesi.<br />
Detection and Quantification of Root-lesion Nematodes from Field Soil by<br />
Conventional and Real Time PCR<br />
Qiu, J., B B. Westerdahl & V.M. Williamson<br />
Department of Nematology, University of California, One Shields Avenue, Davis, CA 95616.<br />
It is challenging to detect and quantify nematodes from soil extracts by PCR due to PCR<br />
inhibitors in soil. We have developed a protocol for detection of root lesion nematode<br />
Pratylenchus spp. in soil extracts using conventional PCR with specific primers. Nematodes<br />
are extracted from soil using Baermann funnels and centrifugal flotation in a sucrose gradient<br />
that alleviates the inhibition and increases the sensitivity of PCR detection. The nematode<br />
extract is then digested with proteinase K and the digestion used as a DNA template in the<br />
PCR assay. With this protocol and species-specific primers designed from ITS sequences<br />
obtained through cloning and sequencing technologies, we diagnosed P. penetrans, P.<br />
vulnus, P. scribneri and P. thornei, four major species in California fields by multiplex PCR.<br />
Analysis of unknown samples indicated that the detection was sensitive and specific. It<br />
detected samples at levels as low as a single target nematode among hundreds of thousands of<br />
other plant parasitic and free-living ones. We quantified P. vulnus from orchard soil by real<br />
time PCR. Grinding prior to proteinase K digestion was used to prepare nematode DNA.<br />
DNA quantity per female is about 1.5 times higher than for other stages, but quantities are<br />
similar for males and juveniles. All stages are present in California field and females<br />
5 th International Congress of Nematology, 2008 124