fta reference publications - Whatman
fta reference publications - Whatman
fta reference publications - Whatman
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FTA REFERENCE PUBLICATIONS<br />
Animal Biotechnology<br />
Alhassan A, Iseki H, Kim C, Yokoyama N and Igarashi I (2007) Comparison of polymerase chain reaction methods<br />
for the detection of Theileria equi infection using whole blood compared with pre-extracted DNA samples as<br />
PCR templates. Trop Anim Health Prod 39:369-374<br />
Baron EE, Martinez ML, Verneque RS, and Coutinho LL (2002) Parentage testing and effect of misidentification on<br />
the estimation of breeding value in Gir cattle Genetics and Molecular Biol 25(4):389-394.<br />
Bendezu IF, Slater JW and Carney BF (2005) Identification of Mytilus spp. and Pecten maximus in Irish waters by<br />
standard PCR of the 18S rDNA gene and multiplex PCR of the 16S rDNA gene Marine Biotechnol 7(6) 687-696.<br />
Berghaus RD, Farver TB, Anderson RJ, Jaravata CC and Gardner IA (2006) Environmental sampling for detection of<br />
Mycobacterium avium ssp. paratuberculosis on large California dairies J Dairy Sci 89:963-970.<br />
Callahan CR, Henderson Ap, Eackeles MS and King TL (2005) Microsatellite DNA markers for the study of<br />
population structure and dynamics in nutria (Myocastor coypus) Molecular Ecology Notes 5:124-126.<br />
Campos F, Hernández M, Arizaga J, Miranda R and Amezcua A (2005) Sex differentiation of Corn Buntings Miliaria<br />
calandra wintering in northern Spain Ringing & Migration 22:159-162<br />
Crabbe MJC (2003) A novel method for the transport and analysis of genetic material from polyps and<br />
zooxanthellae of scleractinian corals J. Biochem. Biophys. Methods 57: 171-176<br />
Davis GH, Galloway SM, Ross IK, Gregan SM, Ward J, Nimbkar BV, Ghalsasi PM, Nimbkar C, Gray GD, Subandriyo,<br />
Inounu I, tiesnamurti B, Martyniuk E, Eythorsdottir E, Mulsant P, Lecerf F, Hanrahan JP, Bradford GD and Wilson T<br />
(2002) DNA tests in prolific sheep from eight countries provide new evidence on origin of the Booroola (FecB)<br />
mutation Biology of Reproduction 66:1869-1874.<br />
Dutton CJ and Tieber A (2001) A modified protocol for sex identification of in ovo avian embryos and its<br />
application as a management tool for endangered species conservation programs J Zoo Wildlife Med 32(2)176-<br />
180.<br />
Forrest RH, Hickford JGH, Hogan A and Frampton C (2003) Polymorphism at the ovine β3-adrenergic receptor<br />
locus: associations with birth weight, growth rate, carcass composition and cold survival Animal Genetics<br />
34:19-25.<br />
Gonzalez JL, Loza, A and Chacon E (2005) Sensitivity of different Trypanosoma vivax specific primers for the<br />
diagnosis of livestock trypanosomosis using different DNA extraction methods Vet Parasitol. 136:119-126<br />
Gutierrez-Corchero F, Arruga MV, Sanz L, Garcia C, Hernandez MA and Campos F (2002) Using FTA cards to store<br />
avian blood samples for genetic studies. Their application in sex determination Molecular Ecology Notes 2: 75-<br />
77<br />
Halbert NK, Raudsepp T, Chowdhary BP and Derr JN (2004) Conservation genetic analysis of the Texas State<br />
bison herd J Mammalology 85(5):924-931<br />
<strong>Whatman</strong>, Inc. 1<br />
May 2008
Halbert ND and Derr JN (2007) A comprehensive evaluation of cattle introgression into US federal bison herds J<br />
Heredity 98:1-12<br />
Hernandez MA, Campos F, Gutierrez-Corchero R and Amezcua A (2004) Identification of Lanius species and<br />
subspecies using tandem repeats in the mitochondrial DNA control region. Ibis 146:227-230.<br />
Hickford JGH, Zhou H, Slow S and Fang Q (2004) Diversity of the ovine DQA2 gene J. Anim Sci. 82:1553-1563.<br />
Hickford JGH, Zhou H and Fang Q (2007) Haplotype analysis of the DQA genes in sheep: Evidence supporting<br />
recombination between the loci J. Anim Sci 85:577-582<br />
Inoue R, Tsukahara T, Sunaba C, Itoh M and Ushida K (2007) Simple and rapid detection of the porcine<br />
reproductive and respiratory syndrome virus from pig whole blood using filter paper J Virol Methods 141:102-106<br />
Jaravata CV, Smith WL, Rensen GJ, Ruzante JM and Cullor JS (2006) Detection of Mycobacterium avium subsp.<br />
paratuberculosis in bovine manure using <strong>Whatman</strong> FTA Card technology and Lightcycler real-time PCR<br />
Foodborne Pathogens and Disease 3(2)212-215<br />
Jefferies R, Ryan UM and Irwin PJ (2007) PCR-RFLP for the detection and differentiation of the canine piroplasm<br />
species and its use with filter paper-based technologies Vet Parasitol 144:20 - 27<br />
King T, Eackles MS, Henderson AP, Bocetti CI, Currie D and Wunderle Jr JM (2005) Microsatellite DNA markers for<br />
delineating populaton structure and kinship among the endangered Kirtland's warbler (Dendroica kirtlandii)<br />
Molecular Ecology Notes 5(3):569-571<br />
Lucentini l., Palomba A., Lancioni H., Natali M. and Panara F (2006) A nondestructive, rapid, reliable and<br />
inexpensive method to sample, store and extract high-quality DNA from fish body mucus and buccal cells Mol<br />
Ecol Notes 6, 257-260<br />
Matsumoto GI, Raskoff KA and Lindsay DJ (2003) Tiburonia granrojo n. sp., A Mesopelagic Scyphomedusa from<br />
the Pacific ocean representing the type of a new subfamily (class Scyphozoa: order Semaeostomeae: family<br />
Ulmaridae: subfamily Tiburoniinae subfam.nov.) Marine Biology 143(1)73-77<br />
Moscoso H, Thayer SG, Hofacre CL and Kleven SH (2004) Inactivation, storage and PCR detection of mycoplasma<br />
on FTA Filter Paper Avian Diseases 48:841-850.<br />
Moscoso H, Raybon EO, Thayer SG and Hofacre CL (2005) Molecular detection and serotyping of infectious<br />
bronchitis virus from FTA® Filter Paper Avian Diseases 49:24-29<br />
Moscoso H, Alvarado I and Hofacre CL (2006) Molecular analysis of infectious bursal disease virus from bursal<br />
tissues collected on FTA® filter paper Avian Diseases 50:391-396<br />
Neimark H, Hoff B and Ganter M (2004) Mycoplasma ovis comb. Nov. (formerly Eperythrozoon ovis), an<br />
epierythrocytic agent of haemolytic anaemia in sheep and goats Int J Systm Evol Microbiol. 54:365-371.<br />
O'Shea B, Khare S, Bliss K, Klein P, Ficht TA, Adams LG and Rice-Ficht AC (2004) Amplified fragment length<br />
polymorphism reveals genomic variability among Mycobacterium avium subsp. paratuberculosis isolates J.<br />
Clin. Microbiol. 42(8) 3600-3606<br />
Pereira F, Davis SJM, Pereira L, McEvoy B, Bradley DG and Amorim A (2006) Genetic signatures of a<br />
Mediterranean influence in Iberian Peninsula sheep husbandry Mol Biol Evol 23:1420-1426<br />
May 2008 2
Perozo F, Villegas P, Estevez C, Alvarado I and Purvis LB (2006) Use of FTA® filter paper for the molecular<br />
detection of Newcastle disease virus Avian Pathol 35(2) 93-98.<br />
Picard-Meyer E, Barrat J and Cliquet F (2007) Use of filter paper (FTA®) technology for sampling, recovery and<br />
molecular characterization of rabies viruses. J Virol Method 140:174-182<br />
Purvis LB, Villegas P and Perozo F (2006) Evaluation of FTA® paper and phenol storage, extraction and<br />
molecular characterization of infectious bursal disease virus J Virol Methods 138:66-69<br />
Rejt L, Rutkowski R and Gryczynska-siemiatkowska A (2004) Genetic variability of urban Kestrals in Warsaw -<br />
preliminary data Zool. Poloniae 49: 199 - 209<br />
Rensen G, Smith W, Rutante J, Sawyer M, Osburn B and Cullor J (2005) Development and evaluation of a real-time<br />
fluorescent polymerase chain reaction assay for the detection of bovine contaminates in cattle feed Foodborne<br />
Pathogens and Disease 2(2)152-159<br />
Schifferli C, Villaroel M and Arruga MV (2000) DNA obtention to study BLAD in Argentine and Spanish cattle Arch.<br />
Zootec. 49:505-508.<br />
Schulman ML, Harper CK, Bell E, Nel A nd Guthrie AJ (2002) Microsatellite analysis of cryopreserved stallion<br />
semen stored on FTA® paper J South African Vet Assoc 73(4):222-223.<br />
Seabury CM, Halbert ND, Gogan PJP, Templeton JW and Derr JN (2005) Bison PRNP genotyping and potential<br />
association with Brucella spp. Seroprevalence Animal Genetics 36:104-110.<br />
Seabury, CM and JN Derr (2003) Identification of a novel ovine PrP polymorphism and scrapie-resistant<br />
genotypes for St. Croix White and a related composite breed Cytogenet Genome Res 102:85-88.<br />
Signorovitch AY, Dellaporta SL, and Buss LW (2005) Molecular signatures for sex in the placozoa Proc, Natl. Acad<br />
Sci 102(42) 15518-15522<br />
Signorovitch AY, Dellaporta SL, and Buss LW (2006) Caribbean placozoan phylogeography Biol. Bull. 211:149-156<br />
Smith LM and Burgoyne LA (2001) Species identity: conserved inverted LINE repeat clusters (ILRC) in the<br />
vertebrate genome as indicators of population boundaries Gene 271: 273-283<br />
Smith, LM and Burgoyne, LA (2004) Collecting, archiving and processing DNA from wildlife samples using FTA®<br />
databasing paper BMC Ecology 4:4<br />
Snowden KF, Logan KS and Vinson SB (2002) Simple, filter-based PCR detection of Thelohania solenopsae<br />
(Microspora) in fire ants (Solenopsis invicta) Journal of Eukaryotic Microbiology 49(6): 447-448.<br />
Stoffregen WC, Alt DP, Palmer MV, Olsen SC, Waters WR and Stasko JA (2006) Identification of a<br />
haemomycoplasma species in anemic reindeer (Rangeifer tarandus) J Wildlife Dis 42(2): 249-258<br />
Suematsu N and Isohashi F (2006) Rapid and simple screening of transgenic mice: novel extraction-free, filter<br />
based PCR genotyping from blood samples Acta Biochimia Polonica 53 (3) 613-616<br />
Thompson PN, Steinlein OK, Harper CK, Kraner S, Sieb JP and Guthrie AJ (2003) Congenital myasthenic syndrome<br />
of Brahman cattle in South Africa Vet. Rec. 153(25): 779-781<br />
May 2008 3
van Asch B, Pereira L, Pereira F, Santa-Rita P, Lima M and Amorim A (2005) MtDNA diversity among four<br />
Portuguese autochthonous dog breeds: a fine-scale characterization BMC Genetics 6:37<br />
Waiswa C, Picozzi K, Olaho-Mukani W and Katunguka-Rwakishaya E (2003) Monitor lizard (Varanus niloticus,<br />
Linnaeus, 1766) as a host for tsetse (Glossina fuscipes fuscipes, Newstead, 1910) in the sleeping sickness<br />
endemic foci of Uganda African Journal of Ecology 41,349-351<br />
Zhou H and Hickford JGH (2004) Allelic Polymorphism in the ovine DQA1 gene J. Anim Sci. 82:8-16<br />
Zhou H, Hickford JGH and Fang Q (2005) Technical Note: Determination of alleles of the ovine PRNP gene using<br />
PCR- single-strand conformational polymorphism analysis J. Anim. Sci 83:745-749<br />
Zhou H, Hickford JGH and Fang Q (2005) Polymorphism of the DQA2 gene in goats J. Anim Sci 83:963-968<br />
Zhou H, Hickford JGH, Fang Q and Byun SO (2007) Short Communication: Identification of allelic variation at the<br />
bovine DRA locus by polymerase chain reaction-single stranded conformational polymorphism. J. Dairy Sci<br />
90:1943-1946<br />
Biobanking<br />
Neimark H (2005) Proposal for archival <strong>reference</strong> collections of chromosomal DNA from uncultivated<br />
bacterial species Int J systmatic Evol Microbiol 55:1407 Letter to the Editor<br />
Seah LH and Burgoyne LA (2000) DNA databasing on FTA® Paper: Biological assault and techniques for<br />
measuring photogenic damage Progress in Forensic Genetics 8:74 – 77<br />
Seah LH and Burgoyne LA (2001) Photosensitizer initiated attacks on DNA under dry conditions and their<br />
inhibition: a DNA archiving issue J. Photochem and Photobiol B: Biology 61: 10 -20<br />
Diagnostics<br />
Barton, JC, R Swada-Hirai, BE Rothenberg and RT Acton (1999) Two novel missense mutations of the HFE<br />
gene (I105T and G93R) and identification of the S65C mutation on Alabama hemochromatosis probands<br />
Blood Cells, Molecules and Diseases 25(3)147-155<br />
Beck IA, Drennan KD, Melvin AJ, Mohan KM, Herz AM, Alarcón J, Piscoya J, Velázquez C and Frenkel LM (2001)<br />
Simple, sensitive, and specific detection of Human Immunodeficiency Virus Type 1 subtype B DNA in dried<br />
blood samples for the diagnosis in infants in the field J Clin Micro 39: 29-33<br />
Becker S, Franco JR, Simarro PP, Stich A, Abel PM and Steverding D (2004) Real-time PCR for detecting<br />
Trypanosoma brucei in human blood samples Diag. Microbiol. Inf. Dis. 50:193-199.<br />
May 2008 4
Beckett SM, Lughton SJ, Dalla Poxxa L, McCowage GB, Marshall G, Cohn RJ, Milne E and Ashton LJ (2008) Buccal<br />
swabs and treated cards: methodological considerations for molecular epidemiologic studies examining<br />
pediatric populations. Am J Epidemiol 167: 1260-1267<br />
Bhattacharya SS, Kulka M, Lampel KA, Cebula TA and Goswami BB (2004) Use of Reverse Transcription and<br />
PCR to Discriminate Between Infectious and Non-Infectious Hepatitis A Virus. J Virological Meth. 116:181-187.<br />
Birtles A, McCarthy N, Sheppard CL, Rutter H, Guiver M, Haworth E and George RC (2005) Multilocus sequence<br />
typing directly on DNA from clinical samples and cultured isolate to investigate linked fatal pneumococcal<br />
disease in residents of a shelter for homeless men J Clin Microbiol 43:2004-2008<br />
Blair PJ, Schoeler GM, Moron C, Anaya E, Caceda R, Cespedes M, Cruz C, Felices V, Guevara C, Huaman A,<br />
Luckett R, Mendoza L, Richards AL, Rios Z, Sumner JW, Villaseca P and Olson JG (2004) Evidence of Rickettsial<br />
and Leptospira infections in Andean Northern Peru Am. J. Trop. Med. Hyg. 70(4): 357-363<br />
Chappuis F, Loutan L, Simarro P, Lejon V and Büscher P (2005) Options for field diagnosis of human African<br />
trypanosomiasis Clin. Microbiol. Rev. 18(1)133-146<br />
Chu DMT, Sherchand JB, Cross JH and Orlandi PA (2004) Detection of Cyclospora Cayetanensis in animal<br />
fecal isolates from Nepal using and FTA filter-base polymerase chain reaction method Am. J. Trop. Med. Hyg<br />
71(4):373-379<br />
Devost NC and Choy FYM (2000) Mutation analysis of Gaucher disease using dot-blood samples on FTA<br />
filter paper Am J Med Gen 94: 417-420<br />
Dictor M, Warenholt J and Isinger A (2005) Resolving T-cell receptor clonality in two and genotype in four<br />
multiplex polymerase chain reactions Haematologica/The Hematology J 90(11)1524-1523<br />
Dictor M, Skogvall I, Warenholt J and Rambech E (2007) Multiplex polymerase chain reaction on FTA cards vs.<br />
flow cytometry for B-lymphocyte clonality. Clin Chem Lab Med 45:339-345<br />
Dobbs LJ, Madigan MN, Carter AB and Lori Earls L (2002) Use of FTA Gene Guard filter paper for the storage<br />
and transportation of tumor cells for molecular testing Arch Path Lab Med 126: 56-63<br />
Franchina M, Kadin ME and Abraham LJ (2005) Polymorphism of the CD30 promoter microsatellite repressive<br />
element is associated with development of primary cutaneous lymphoproliferative disorders Cancer<br />
Epidemiol Biomarkers Prev 14(5) 1322-1325<br />
Fujiwara Y, Chi DDJ, Wang H, Keleman P, Morton DL, Turner R and Hoon DSB (1999) Plasma DNA<br />
microsatellites as tumor-specific markers and indicators of tumor progression in melanoma patients Cancer<br />
Res. 59:1567-1571<br />
Guio H, Okayama H, Ashino Y, Saitoh H, Xiao P, Miki M, Yoshihara N, Nakanowatari S and Hattori T (2006)<br />
Method for efficient storage and transportation of sputum specimens for molecular testing of tuberculosis<br />
Int J Tuberc Lung Dis 10(8):906-910<br />
Henderson TRM, Coster DJ and Williams KA (2001) The long term outcome of limbal allografts: the search for<br />
surviving cells Br J Ophthalmol 85:604 – 609<br />
May 2008 5
Hou L, Tu B, Ling G, Tang T, Cao K, Steiner NK, Lazaro A, Ng J Hartzman RJ and Hurley CK (2006) Strategies for<br />
evaluating B*18 allelic diversity by sequence-based typing applied to studies of a population from Singapore<br />
and African-Americans Tissue Antigens 67, 66-69<br />
Hsiao K, Lin H, Pan H, Li T, Chen S, Jou S, Chiu Y, Wu M, Lin C and Li S (1999) Application of FTA sample<br />
collection and DNA purification system on the determination of CTG trinucleotide repeat size by PCR-based<br />
Southern blotting J. Clin Lab. Anal. 13: 188-193<br />
Hunter M, Heyer E, Auterlitz F, Angelicheva D, Nedkova V, Briones P, Gata A, De Pablo R, Laszlo A, Bosshard N,<br />
Gitzelmann R, Tordai A, Kalmar L, Szalai C, Balogh I, Lupu C, Corches A, Popa G, Perez-Lezuan A and Kalaydjieva<br />
LV (2002) The P28T mutation in the GALK1 gene accounts for galactokinase deficiency in Roma (Gypsy)<br />
patients across Europe. Pediatr Res 51:602-606<br />
Jaijakul S, Saksirisampant W, Prownebon J, Yenthakam S, Mungthin M, Leelayoova S and Nuchprayoon S (2005)<br />
Pneumocystic Jiroveci in HIV/AIDS patients: detection by FTA filter paper together with PCR in noninvasive<br />
induced sputum specimens J Med Assoc Thai 88(Suppl 4) S294-299<br />
Jou S, Lin H, Pan H, Chiu Y, Li S, Lee C and Hsiao K (2001) Delineation of CTG repeats and clinical features in<br />
a Taiwanese mytotonic dystrophy family Proc. Natl. Sci. Counc. ROC(B) 25 (1) 40 -44.<br />
Kerlin BA, Yan SB, Isermann, BH, Brandt JT, Sood R, Basson Br, Joyce DE, Weiler H and Dhainaut JF (2003)<br />
Survival advantage associated with heterozygous factor V Leiden mutation in patients with severe sepsis<br />
and in mouse endotoxemia Blood 102(9)3085-3092<br />
Linton CJ, Borman AM, Cheung G, Holmes AD, Szekely A, Palmer MD, Bridge PD, Campbell CK and Johnson, EM<br />
(2007) Molecular identification of unusual pathogenic yeast isolates by large ribosomal subunit gene<br />
sequencing: 2 years experience at the UK Mycology Reference Laboratory J. Clin. Microbiol 45:1152-1158<br />
Loparev V, Martro E, Rubtcova E, Rodrigo C, Piette JC, Caumes E, Vernant JP, Schmid DS and Fillet AM (2007)<br />
Toward universal Varicella-Zoster virus (VZV) genotyping: diversity of VZV strains from France and Spain J<br />
Clin Microbiol 45:559-563<br />
MacLean L, Chisi JE, Odiit M, Gibson WC, Ferris V, Picozzi K and Sternberg JM (2004) Severity of human African<br />
trypanosomiasis in East Africa is associated with geographic location, parasite genotype, and host<br />
inflammatory cytokine response profile Infection and Immunity 72(12):7040-7044<br />
Mechold U, Ogryzko V, Ngo S and Danchin A (2006) Oligoribonuclease is a common downstream target of<br />
lithium-induced pAp accumulation in Escherichia coli and human cells Nucleic Acids Res 34(8) 2364-2373<br />
Mills RAD, Coster DJ and Williams KA (2002) Effect of immunosuppression on outcome measures in a model<br />
of rat limbal transplantation Invest Opthalmol Vis Sci. 43(3)647-655<br />
Nakayama T, Taback B, Nguyen DH, Chi DD, Morton DL, Fujiwara Y and Hoon DSB (2000) Clinical significance<br />
of circulating DNA microsatellite markers in plasma of melanoma patients Ann NY Acad Sci 906; 87-98<br />
Ouma C, Keller CC, Opondo DA, Were T, Otieno RO, Otieno MF, Orago ASS, Ong'echa JM, Vulule JM, Ferrell RE<br />
and Perkins DJ (2006) Association of FCγ receptor IIA (CD32) polymorphism with malarial anemia and highdensity<br />
parasitemia in infants and young children Am J Trop Med Hyg 74(4) 573-577<br />
May 2008 6
Pezzoli N, Silvy M, Woronko A, Le Treut T, Lévy-Mozziconacci A, Reviron D, Gabert J and Picard C (2007)<br />
Quantification of mixed chimerism by real time PCR on whole blood-impregnated FTA cards Leukemia Res<br />
31(9) 1175-1183<br />
Prager M, Türel Z, Speidl WS, Zorn G, Kaun C, Niessner A, Heinze G, Huk I, Maurer G, Huber K and Wokta J (2002)<br />
Chlamydia pneumoniae in carotid artery atherosclerosis a comparison of its presence in atherosclerotic<br />
plaque, healthy vessels, and circulating leukocytes from the same individuals Stroke 33:2756-2761.<br />
Renshaw M, Ellingsen D, Benson J and Hooper WC (2001) Amplification of DNA from blood spots: the<br />
importance of collection paper & primer sequence Focus 23: 8-9<br />
Rocha MN, Melo MR, Longui CA, de Oliveira DVA, Figueiredo CC and Pacchi PR (2005) A three-step molecular<br />
protocol employing DNA obtained from dried blood spots for neonatal screening for 45,X Turner syndrome<br />
Genet.Mol.Res. 4(4):749-754<br />
Rogers CDG and Burgoyne LA (2000) Reverse transcription of an RNA genome from databasing paper (FTA)<br />
Biotech Appl Biochem 31:219-224<br />
Sauerbrei A, Rubtcova E, Wutzler P Schmid DS and Loparev VN (2004) Genetic profile of an Oka Varicella<br />
Vaccine Virus variant isolated from an infant with Zoster J. Clin. Microbiol. 42(12)35604-5608<br />
Silva ES, Pacheco RS, Gontijo CMF, Carvalho IR and Brazil RP (2002) Visceral leishmaniasis caused by<br />
Leishmania (Viannia) braziliensis in a patient infected with human immunodeficiency virus Rev. Inst. Med.<br />
Trop. S. Paulo 44(3) 145-149<br />
Silva ES, Gontijo CMF, Pacheco RS and Brazil RP (2004) Diagnosis of human visceral leishmaniasis by PCR<br />
using blood samples spotted on filter paper Genetics and Molecular Res. 3(2): 251-257<br />
Siripattanapipong S, Worapong J, Mungthin M, Leelayoova S and Peerapan T (2005) Genotype study of<br />
Pneumosystis jirovecii in human immunodeficiency virus-positive patients in Thailand J Clin Microbiol<br />
43(5):2104-2110<br />
Stienstra Y, van der Werf TS, Oosterom E, Nolte IM, van der Graaf WTA, Etuaful S, Raghunathan PL, Whitney EAS,<br />
Ampadu EO, Asamoa K, Klutse EY, te Meerman GJ, Tappero JW, Ashford DA and van der Steege G (2006)<br />
Susceptibility to Buruli ulcer is associated with the SLC11A1 (NRAMP1) D543N polymorphism Genes and<br />
Immunity 7, 185-189<br />
Taback B, Fujiwara Y, Wang HJ, Foshag LJ, Morton DL and Hoon DSB (2001) Prognostic significance of<br />
circulating microsatellite markers in the plasma of melanoma patients. Cancer Res. 61:5723-5726<br />
Taback B, Giuliano AE, Hansen NM, Singer FR, Shu S and Hoon DSB (2003) Detection of tumor-specific genetic<br />
alterations in bone marrow from early-stage breast cancer patients Cancer Res. 63:1884-1887<br />
Tassone F, Pan R, Amiri K, Taylor AK and Hagerman PJ (2008) A rapid polymerase chain reaction-based<br />
screening method for identification of all expanded alleles of the Fragile X (FMR1) gene in newborn and highrisk<br />
populations J Mol Diagn 10:43-49<br />
May 2008 7
Visapää JP, Götte K, Benesova M, Li J, Homann N, Conradt C, Inoue H, Tisch M, Hörrmann K, Väkeväinen S,<br />
Salaspuro M and Seitz HK (2004) Increased cancer risk in heavy drinkers with the alcohol dehydrogenase<br />
1C*1 allele, possibly due to salivary acetaldehyde. Gut 53:871-876.<br />
Wang Z, Orlandi PA and Stenger DA (2005) Simultaneous detection of four human pathogenic microsporidian<br />
species from clinical samples by oligonucleotide microarray J Clin Microbiol 43(8)4121-4128<br />
Weiss TW, Kvakan H, Kaun C, Prager M, Speidl WS, Zorn G, Pfaffenberger S, Huk I, Maurer G, Huber K and Wojta J<br />
(2006) No evidence for a direct role of helicobacter pylori and mycoplasma pneumoniae in carotid artery<br />
atherosclerosis based on their respective presence in the atherosclerotic plaque, in healthy vessels and in<br />
circulating leukocytes from the same individuals J. Clin Pathol published online<br />
http://jcp.bmjjournals.com/cgi/content/abstract/jcp.2005.034314v1<br />
Genomics/Clone Storage<br />
Hansen P and Blakesley R (1998) Simple archiving of bacterial and plasmid DNAs for future use Focus 20(3)<br />
72-74<br />
Igoe F and Robbins JC (2004) Amplifying stored plasmids for sequencing Genetic Engineering News 24(2): 34<br />
Human ID/Forensics<br />
Belgrader P & Marino MA (1999) Automated sample processing using robotics for genetic typing of STR<br />
polymorphisms by capillary electrophoresis Lab. Robotics & Automation 9: 3-7<br />
Belgrader P, DelRio SA, Turner KA, Marino MA, Weaver KA and Williams PE (1995) Automated DNA purification<br />
and amplification from bloodstain cards using a robotic workstation BioTechniques 19: 426-432<br />
Birus I, Marcikić M, Lauc D, Džijan S and Luac G (2003) How high should paternity index be for reliable<br />
identification of war victims by DNA typing? Croat Med J 44:322-326.<br />
Budowle B, Smith J, Moretti T and DiZinno J (2000) DNA typing protocols: molecular biology and forensic<br />
analysis. BioTechniques® Books Publication pp 41 – 42, Eaton Publishing, Natick MA<br />
Cerda-Flores RM, Budowle B, Jin L, Barton SA, Deka R and Chakraborty R (2002) Maximum likelihood estimates<br />
of admixture in northeastern Mexico using 13 short tandem repeat loci. Am J Hum Biol 14:429-439.<br />
Chomczynski P and Rymaszewski M (2006) Alkaline polyethylene glycol-based method for direct PCR from<br />
bacteria, eukaryotic tissue samples and whole blood. BioTechniques 40(4) 454-458<br />
Del Rio SA, Marino MA and Belgrader P (1996) Reusing the same blood-stained punch for sequential DNA<br />
amplifications and typing BioTechniques 20: 970-974<br />
May 2008 8
Džijan S, Primorac D, Marcikić M, Andelinović S, Sutlović D, Dabelić S and Lauc G (2005) High estimated<br />
likelihood ratio might be insufficient in a DNA-lead process of identification of war victims Croatica Chem Acta<br />
78(3): 393-396<br />
Forrest SW, Kupferschmid TD, Hendickson BC, Judkins T, Petersen DJ and Scholl T (2004) Two rare<br />
polymorphisms in the D8S1179 and D13S317 markers and method to mitigate their impact on human<br />
identification Croat Med J 45:457-460<br />
Fujita Y and Kubo S (2006) Application of FTA® technology to extraction of sperm DNA from mixed body<br />
fluids containing semen Legal Medicine (Tokyo) 8(1) 43 - 47<br />
Gaytmenn R, Sweet D, Hiledbrand DP and Pretty IA (2002) Determination of the sensitivity and specificity of<br />
sibship calculations using AmpFISTR Profiler Plus Int J Legal Med 116:161-164<br />
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Ivanov PL, Zemskova EY, Tarasova TA, Frolova SA, Mikhalkovich LS and Korniyenko IV (2002) The experience of<br />
using the FTA® cards for blood samples storage at conducting the molecular-and-genetic identification of<br />
non-identified killed persons - victims of military actions in the territory of the Chechen Republic Sudebno-<br />
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Kline MC, Duewer DL, Redman JW, Butler JM and Boyer DA (2002) Polymerase chain reaction amplification of<br />
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archival media Analytical Chemistry 74: 1863-1869<br />
Krenke BE, Tereba MS, Anderson SJ, Buel E, Culhane S, Finis CJ, Tomsey Cs, Zachetti JM, Masibay A, Rabbach<br />
DR, Amiott EA and Sprecher CJ (2002) Validation of a 10-Locus fluorescent multiplex system J Forensic Sci<br />
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LaFountian MJ, Schwartz MB, Svete PA, Walkinshaw MA and Buel E (2001) TWGDAM validation of the<br />
AmpFlSTR Profiler Plus and the AmpFlSTR Cofiler STR multiplex systems using capillary electrophoresis J<br />
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Nelson MS, Levedakou EN, Matthews JR, Early BE, Freeman DA, Kuhn CA, Sprecher CJ, Amin AS, McElfresh KC<br />
and Schumm JW (2002) Detection of a primer-binding site polymorphism for the STR locus D16S539 using the<br />
PowerPlex 1.1 System and validation of a degenerate primer to correct for polymorphism Journal of Forensic<br />
Science 47 (2): 345-349<br />
Pagano S, Sans M, Pimenoff V, Cantera AM, Alvarez JC, Lorente JA, Peco JM, Mones P and Sajantila A (2005)<br />
Assessment of HV1 and HV2 mtDNA variation for forensic purposes in an Uruguayan population sample J<br />
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Park, SJ, Kim JY,Yang YG and Lee SH (2008) Direct STR amplification with whole blood and blood- or salivaspotted<br />
FTA without DNA purification. J Forensic Sci 53:335-341<br />
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Plaia TW, Josephson R, Liu Y, Zeng X, Ording C, Toumadje A, Brimble SN, Sherrer ES, Uhl EW, Freed WJ, Schulz<br />
TC, Maitra A, Rao MS and Auerbach JM (2006) Characterization of a new NIH-registered variant human<br />
embryonic stem cell line, BG01V: a tool for human embryonic stem cell research Stem Cells 24:531-546<br />
Raina A and Dogra TD (2002) Application of DNA fingerprinting in medicolegal practice J. Indian Med. Assoc.<br />
100(12) 688-694<br />
Salvador JM and De Ungria MCA (2003) Isolation of DNA from saliva of betel quid chewers using treated cards.<br />
J Forensic Sci 48(4)749-797<br />
Salvador JM and De Ungria MCA (2004) DNA stability of forensic STR markers in FTA extracted buccal DNA<br />
of betel-quid chewers. Oral Oncology 40:231-232.<br />
Schmalzing D, Koutny L, Adourian A, Belgrader P and Matsudaira (1977) DNA typing in thirty seconds with a<br />
microfabricated device Proc Natl Acad Sci 94:10273-10278<br />
Seah LH, Jeevan NH, Othman MI, Jaya P Ooi YS, Wong PC and Kee SS (2003) STR Data for the AmpFLSTR<br />
Identifiler loci in three ethnic groups (Malay, Chinese, Indian) of the Malaysian population. Forensic Science<br />
International 138:134-137.<br />
Sitaraman K, Darfler M and Westfall B (1999) Amplification of large DNA from blood stored at room temperature<br />
Focus 21(1):10<br />
Tack LC, Thomas M and Reich K (2005) Automated forensic DNA purification optimized for FTA card punches<br />
and Identifiler STR-based PCR analysis J Am Lab. Auto 10: 231 - 236.<br />
Thacker C, Phillips CP and Court DS (1999) Use of FTA cards in small volume PCR reactions Progress in<br />
Forensic Genetics 8, 473-475.<br />
Vanek D, Hradil R and Budowle B (2000) Czech population data on 10 short tandem repeat loci of SGM Plus<br />
STR system kit using DNA purified in FTA cards Forensic Science International 119:107-108<br />
Infectious Disease<br />
Adams ER, Malele II, Msangi AR and Gibson WC (2006) Trypanosome identification of wild tsetse populations<br />
in Tanzania using generic primers to amplify the ribosomal RNA ITS-1 region Acta Tropica 100: 103-109<br />
Higgins et al. (2000) Detection of Francisella tularensis in infected mammals and vectors using a probe based<br />
polymerase chain reaction Am J of Tropical Medicine and Hygiene 62:310-318<br />
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Analytical Chemistry 70: 2013-2017<br />
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Microbiol 41(12)5517-5524<br />
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Li et al. (2004) Persistence of human immunodeficiency virus type 1 subtype B DNA in dried-blood samples<br />
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Loparev VN, Rubtcova EN, Bostik V, Govil D, Birch CJ, Druce JD, Schmid DS and Croxson MC (2007) Identification<br />
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Mohanty A, Kar P, Mishra K, Singh DV, Mohapatra N, Kar SK, Dash AP and Hazra RK (2007) Multiplex PCR assay<br />
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Morrison LJ, McCormack G, Sweeney L, Likeufack ACL, Truc P, Turner CM, Tait A and Macleod A (2007) Use of<br />
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Nantavisai K, Mungthin M, Tan-ariya P, Rangsin R, Naaglor T and Leelayoova S (2007) Evaluation of the<br />
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Picozzi K, Fèvre EM, Odiit M, Carrington M, Eisler MC, Maudlin I and Welburn SC (2005) Sleeping sickness in<br />
Uganda: a thin line between two fatal diseases BMJ 331:1238-1241<br />
Subrungruang et al. (2004) Evaluation of DNA extraction and PCR methods for detection of Enterocytozoon<br />
bienuesi in stool specimens J Clin. Microbiol 42(8)3490-3494<br />
Zhong et al. (2001) Comparison of IsoCode STX and FTA Gene Guard collection matrices as whole blood<br />
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Microbiological/Environmental<br />
Borman AM, Linton CJ Miles SJ, Campbell and Johnson EM (2006) Ultra-rapid preparation of total genomic DNA<br />
from isolates of yeast and mould using <strong>Whatman</strong> FTA filter paper technology - a reusable DNA archiving<br />
system Medical Mycol 44:389-398<br />
Campbell CK, Borman AM, Linton CJ, Bridge PD and Johnson EM (2006) Arthroderma olidum, sp. Nov. A new<br />
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Appl Envir Microbiol. 68(8) 4168-4172<br />
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immobilisation on FTA paper. BMC Ecology 3:7<br />
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Herwaldt BL (2002) Outbreak of Cyclosporaiasis associated with imported raspberries, Philadelphia,<br />
Pennsylvania, 2000. Emerg. Infect. Dis. 8(8) serial online<br />
Lampel KA, Orlandi PA, and Kornegay L (2000) Improved template preparation for PCR- based assays for<br />
detection of food-borne bacterial pathogens Appl and Envr Microbiol 66: 4539-4542<br />
Lampel,KA, Dyer D, Kornegay L and Orlandi PA (2004) Detection of Bacillus spores using PCR and FTA filters.<br />
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Lim DV, Simpson JM, Kearns EA and Kramer MF (2005) Current and developing technologies for monitoring<br />
agents of bioterrorism and biowarfare. Clin. Microbiol Rev. 18(4)583-607<br />
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PCR detection of pathogenic parasitic protozoa J Clin Microbiol 38: 2271-2277<br />
Orlandi PA and Lampel KA (2003) FTA filter applications: PCR format for alleviating technical barriers in the<br />
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Orlandi PA, Carter L, Brinker AM, da Silva AJ, Chu D, Lampel KA and Monday SR (2003) Targeting single<br />
nucleotide polymorphisms in the 18S rRNA gene to differentiate Cyclospora species and Eimeria species by<br />
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Rajendram D, Ayenza R, Holder FM, Moran B, Long T, Shah HN (2006) Long-term storage and safe retrieval of<br />
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Renouf V, Falcou M, Miotr-Sertier C, Perello MC, De Revel G, and Lonvaud-Funel A (2006) Interactions between<br />
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Aspergillus oryzae based on colony direct polymerase chain reaction J Biosci Bioeng 102:572-574<br />
Tilsala-Timisjarvi A and Alatossava T (2004) Rapid DNA preparation from milk and dairy process samples for<br />
the detection of bacteria by PCR. Food Microbiol, 21:365-368<br />
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Valiente Moro C, Desloire S, Vernozy-Rozand C, Chauve C, and Zenner L (2007) Comparison of the VIDAS®<br />
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Appl Microbiol 44:431-436<br />
Pharmcogenomics/Genotyping<br />
Aydemir TB, Blanchard RK and Cousings RJ (2006) Zinc supplementation of young men alters metallothionein,<br />
zinc transporter, and cytokine gene expression in leukocyte populations. Proc Natl Acad Sci 103(6) 1699-1704<br />
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Preservation Technology 3(1)54-60<br />
He H, Argiro L, Dessein H and Chevillard C (2007) Improved technique that allows the performance of largescale<br />
SNP genotyping on DNA immobilized by FTA® technology Infect, Genetics Evolution 7(1) 128-132<br />
Lema C, Kohl-White K, Lewis LR and Dao DD (2006) Optimized pH method for DNA elution from buccal cells<br />
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Littlejohn et al. (2002) Determination of b2-adrenergic receptor (ADRB2) haplotypes by a multiplexed<br />
polymerase chain reaction assay. Human Mutation 20(6)479-479<br />
Martins et al. (2002) Haplotype study of microsatellites flanking the t(15;17) breakpoint in acute promyelocytic<br />
leukemia patients from north Portugal Leukemia 16:1353-1357.<br />
Milne E, Van Bockzmeer FM, Robertson L, Brisbane JM, Ashton LJ, Scott RJ and Armstrong BK (2006) Buccal DNA<br />
collection: comparison of buccal swabs with FTA cards Cancer Epidemiol Biomarkers Prev 15(4):816-819<br />
Montpetit A, Phillips MS, Mongrain I, Lemieux R and St-Louis M (2006) High-throughput molecular profiling of<br />
blood donors for minor red blood cell and platelet antigens Transfusion 46(5) 841-848<br />
Roberts et al. (2000) Rapid and comprehensive determination of cytochrome P450 CYP2D6 poor metabolizer<br />
genotypes by multiplex polymerase chain reaction. Human Mutation 16:77-85.<br />
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Wang et al. (2004) SNP analysis based on strand displacement amplification IVD Technol. 10(6)61-71<br />
Plant Biotechnology<br />
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Bendezu IF (2004) Detection of the tomato MI 1.2 gene by PCR using non-organic DNA purification<br />
Nematropica 34:23-30<br />
Beuselinck PR, Sleper DA, and Bilyeu KD (2006) An assessment of phenotype selection for linolenic acid using<br />
genetic markers Crop Sci 46:747-750<br />
Bilyeu K, Palavalli L, Sleper D and Beuselinck P (2005) Mutations in soybean microsomal Omegea-3 fatty acid<br />
desaturase genes reduce linolenic acid concentraton in soybean seeds Crop Sci 45:1830-1836<br />
Bilyeu KD and Beuselinck PR (2005) Genetic divergence between North American ancestral soybean lines and<br />
introductions with resistance to soybean cyst nematode revealed by chloroplast haplotype Journal of Heredity<br />
96(5)593-599<br />
Crabbe MJ (2003) A novel method for the transport and analysis of genetic material from polyps and<br />
zooxanthellae of scleractinian corals. J. Biochem. Biophys. Methods 57: 171-176<br />
Danson JW, Kimani M and Mbogori M (2006) Detection of Bacillus thuringiensis genes in transgenic maize by<br />
the PCR method and FTA paper technology African J Biotechnol 5(22) 2345-2349<br />
Drescher A & Graner A (2001) PCR-genotyping of barley seedlings using DNA samples from tissue prints Plant<br />
Breeding 121, 228-231<br />
Kakihara Y, Matsufuji H, Chino M and Takeda M (2006) Extraction and detection of endogenous soybean DNA<br />
from fermented foods Food Control 17(10) 808-813<br />
Lin JJ, Fleming R, Kuo J, Matthews BF, Saunders JA. (2000) Detection of plant genes using a rapid, nonorganic<br />
DNA purification method BioTechniques 28: 346-350<br />
Mbogori MN, Kimani M, Kuria A, Lagat M and Danson DW (2006) Optimization of FTA technology for large scale<br />
plant DNA isolation for use in marker assisted selection African J Biotechnol 5(9): 693-696<br />
Mullis SW, Gitaitis RD, Nischwitz C and Csinos AS (2006) First report of onion (Allium cepa) naturally infected<br />
with Iris yellow spot virus in Peru Plant Dis 90:377<br />
Natarajan P, Trinh T, Mertz L, Goldsborough M, Fox DK. (2000) Paper-Based Archiving of Mammalian and Plant<br />
Samples for RNA Analysis BioTechniques 29: 1328-1333<br />
Ndunguru J, Taylor NJ, Yadav J, Aly H, Legg JP, Aveling T, Thompson G, Fauquet CM. (2005) Application of FTA<br />
Technology for Sampling, Recovery and Molecular Characterization of Viral Pathogens and Virus-derived<br />
Transgenes from Plant Tissue. Virology J 2:45<br />
Osman F and Rowhani A (2006) Application of a spotting sample preparation technique for the detection of<br />
pathogens in woody plants by RT-PCR and real-time PCR (TaqMan) J Virol Meth. 133: 130-136<br />
Owor BE, Shepherd DN, Taylor NJ, Edema R, Monjane AL, Thomson JA, Martin DP and Varsani A (2007)<br />
Successful application of FTA® Classic Card technology and use of bacteriophage φ29 DNA polymerase for<br />
large-scale field sampling and cloning of complete maize streak virus genomes J Virol Meth140:100 - 105<br />
Roy Y and Nassuth A (2005) Detection of plant genes, gene expression and viral RNA from tissue prints on<br />
FTA® cards Plant Mol Biol Rep 23:383-395<br />
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Sakamoto, M (2006) DNA collection from bamboos in the field Bamboo J 23: 24-29<br />
Tsukaya H, Iokawa Y, Kondo M, Ohba H. (2005) Large-Scale general collection of wild-plant DNA on Mustang,<br />
Nepal J Plant Res. 118(1) 57-60<br />
Tsukaya H (2003) A Simple method for collecting DNA samples in the field Newsletter of Himalayan Botany<br />
32:15-17.<br />
Tsukaya H (2004) Gene Flow between Impatients Radicans and I. Javensis (Balsaminaceae) in Gunung<br />
Pangrango, Central Java, Indonesia Am J Botany 91(12)2119-2123<br />
May 2008 15