ILP F F (Jatropha curcas L.) Development of ILP Marker to Assess ...

ILP F F (Jatropha curcas L.) Development of ILP Marker to Assess ... ILP F F (Jatropha curcas L.) Development of ILP Marker to Assess ...

20 1 ก - 2555 ก กก (Tanngue, D2, Rwar-Ngn) กกก กกก( 2)3.4 กกกกกก 6 ก ก ( 1) กกกก ก 84.51% () 90.14%() 96.71% Neis geneticdiversity (He) Shannon index (I) 0.39-0.46 0.51-0.61 0.43 0.60 ( 4) กกก กก genetic diversity ก กก กก ก ก ne(effective number <strong>of</strong> allele) กก กก (4-17ก) กกกกกกก Gst (coefficient <strong>of</strong> genedifferentiation) ก 0.06 กกกกกกกก ก Nm75(gene flow index) ก (3.64) กกกก 4 กกกก 6 ก ก <strong>ILP</strong>Group n na ne He INorth 15 2.11 1.84 0.43 0.61Northeast 6 1.97 1.85 0.46 0.61Central 17 1.95 1.82 0.42 0.59South 4 1.90 1.80 0.46 0.58Asia 11 2.18 1.77 0.40 0.59USA and Africa 6 1.88 1.70 0.39 0.51Total 59 2.47 1.84 0.43 0.60SD 0.12 0.06 0.03 0.04Ht Hs Gst Nm0.42 0.42 0.06 3.64Na = Number <strong>of</strong> allelesne = Number <strong>of</strong> effective allelesHe = Neis genetic diversityI = Shannon indexHt = Total gene diversityNm = gene flow indexGst = coefficient <strong>of</strong> gene differentiation3.5 กกกก J. <strong>curcas</strong>กก 59 6 ก Fst กก( 5) Fst กกก (Fst = -0.04052) กกกก (Fst =


20 1 ก - 2555-0.023) (p>0.05) Fst กกกกกกกก กก gene flow ก กกกก Fstกกกกกกก 0.1406 กก geneflow ก กกกกกก กก genetic identity UPGMA dendrogram 3 กก กกกกกกกก coefficient <strong>of</strong> genetic differentiationกก (G ST ) ก 0.06 กก AMOVA กกก 96.86% ( 6) กกกกกกกก 3 Dendrogram กกกก 6 ก4. ก4.1 <strong>ILP</strong> <strong>ILP</strong> กกก microsatellite ก กกกกกกกก [19] 5 ก () Fst () <strong>ILP</strong>Groups North Northeast Central South Asia USA/AfricaNorth - 0.9891 0.9946 0.9591 0.9511 0.9095Northeast -0.0405 ns - 0.9855 0.9550 0.9423 0.9040Central -0.0230 ns -0.0309 - 0.9565 0.9393 0.8962South -0.0113 -0.0376 -0.0043 - 0.9325 0.9000Asia 0.0351 0.0242 0.0534 0.0254 - 0.9597USA/Africa 0.1218 0.1044 0.1406 0.1128 0.0425 -ns not significant at p


20 1 ก - 2555 2 Dendrogram กก77


20 1 ก - 2555 6 Analysis <strong>of</strong> molecular variance (AMOVA) กก 6 กSource <strong>of</strong>Sum <strong>of</strong> Variance Percentage <strong>of</strong>d.f.Variationsquares Component variationF STAmong groupWithin group5112128.051785.470.51716Va15.9417Vb3.1496.860.03142 ก กกก ก กก [20,21] <strong>ILP</strong> codominant กก กกก กก กกกกกกก <strong>ILP</strong>กก กก EST ก Euphorbiaceae กก ก <strong>ILP</strong> 84% ก<strong>ILP</strong> กกกก <strong>ILP</strong>กกกกก [3,4]กกกกกกกกก Ming et al. (2010) [22] กกก <strong>ILP</strong> SSR <strong>ILP</strong> กกกกกก 4.2 กกก ก กกกกกกก กกกกกก กก ก ก RAPD ISSR, AFLP, gSSR EST-SSR กกก [7,23,24,25,26] กกกก <strong>ILP</strong> กก78


20 1 ก - 2555 <strong>ILP</strong> กกกกกกกก กกก (Ht=0.44) กก กกกกกกกก กกกกก กกกกกกก [27] กกกก กกก ก AMOVA กก กกก ก กก กกกกกกกก ก(germplasm) กก กกกกก กกก กก F ST ( 5) กกกกกกกกกกกกกกก กกก 79ก กก กกกกกก dendrogram กกกก6 ก ( 2) กกกกกก กกกกกก ก F ST กกกก กกกกก ก F ST กก- (0.39) กก (0.51) กก ( 4) กกกกกกกกกกกกก Namlat กกกกก NE-CP กก5. ก <strong>ILP</strong> 71 กกกก


20 1 ก - 2555กกก กกกก กกกกก กกกก genetic erosion กกกก ก กกกกก6. ก[1] Choi, H.K., Kim, D., Uhm, T., Limpens, E.,Lim, H., Mun, J.H., Kalo, P., Penmetsa, R.V.,Seres, A., Kulikova, O., Roe, B.A., Bisseling,T., Kiss, G.B. and Cook, D.R., 2004, ASequence-based Genetic Map <strong>of</strong> Medicagotruncatula and Comparison <strong>of</strong> <strong>Marker</strong>Colinearity with M. sativa, Genetics 166:1463-1502.[2] Feltus, F.A., Singh, H.P., Lohithaswa, H.C.,Schulze, S.R., Silva, T.D. and Paterson, A.H.,2006, A Comparative Genomics Strategy forTargeted Discovery <strong>of</strong> Single-nucleotidePolymorphisms and Conserved-noncodingSequences in Orphan Crops, Plant Physiol.140: 1183-1191.[3] Chen, X., Zhang, G. and Wu, W., 2010,Investigation and Utilization <strong>of</strong> Intron LengthPolymorphisms in Conifers, New Forests 41:379-388.[4] Tamura, K.I., Yonemaru, J.I., Hisano, H.,Kanamori, H., King, J., King, I., Tase, K.,Sanada, Y., Komatsu, T. and Yamada, T.,2009, <strong>Development</strong> <strong>of</strong> Intron-flanking EST<strong>Marker</strong>s for the Lolium festuca Complex UsingRice Genomic Information. Theor. Appl.Genet. 118: 1549-1560.[5] Wang, X., Zhao, X., Zhu, J. and Wu, W., 2006,Genome-wide Investigation <strong>of</strong> Intron LengthPolymorphisms and their Potential asMolecular <strong>Marker</strong>s in Rice (Oryza sativa L.),DNA Research 12: 417-427.[6] Wei, H., Fu, Y. and Arora, R., 2005, IntronflankingEST-PCR <strong>Marker</strong>s: From Genetic<strong>Marker</strong> <strong>Development</strong> <strong>to</strong> Gene StructureAnalysis in Rhododendron, Theor. Appl.Genet. 111: 1347-1356.[7] Wen, M., Wang, H., Xia, Z., Zou, M., Lu, C.and Wang, W., 2010, Developmenrt <strong>of</strong> EST-SSR and Genomic-SSR <strong>Marker</strong>s <strong>to</strong> <strong>Assess</strong>Genetic Diversity in <strong>Jatropha</strong> <strong>curcas</strong> L., BMCResearch Notes 3: 42.[8] Gawel, N. and Jarret, R., 1991, A ModifiedCTAB DNA Extraction Procedure for Musaand Ipomoea, Plant Mol. Bio. Rep. 9: 262-266.[9] Yang, L., Jin, G., Zhao, X., Zheng, Y., Xu, Z.and Wu, W., 2007, PIP: A Database <strong>of</strong>Potential Intron Polymorphism <strong>Marker</strong>s,Bioinformatics 23: 2174-2177.80


20 1 ก - 2555 [10] Brendel, V., Xing, L. and Zhu, W., 2004, GeneStructure Prediction from Consensus SplicedAlignment <strong>of</strong> Multiple ESTs Matching thesame Genomic Locus, Bioinformatics 20:1157-1169.[11] Rozen, S. and Skaletsky, H., 2000, Primer3 onthe WWW for General Users and for BiologistProgrammers, Methods Mol. Biol. 132: 365-386.[12] Benbouza, H., Jacquemin, J.M., Baudoin, T.and Mergeai, G., 2006, Optimization <strong>of</strong> aReliable, Fast, Cheap and Sensitive SilverStaining Method <strong>to</strong> Detect SSR <strong>Marker</strong>s inPolyacrylamide Gels, Biol. Agron. Soc. Env.10: 77-81.[13] Liu, K. and Muse, S.V., 2004, Power<strong>Marker</strong>:An Integrated Analysis Environment forGenetic <strong>Marker</strong> Analysis, Bioinformatics 21:2128-2129.[14] Nei, M. and Li, W.H., 1979, MathematicalModel for Studying Genetic Variation inTerms <strong>of</strong> Restriction Endonucleases, Proc. Nat.Acad. Sci. USA 76: 5269-5273.[15] Rohlf, F.J., 1998, NTSYSpc: NumericalTaxonomy and Multivariate Analysis System,version 2.02, Exeter S<strong>of</strong>tware, Setauket, NewYork.[16] Yeh, F., Yang, R., Boyle, T., Ye, Z. and Xiyan,J., 2000, PopGene32, Micros<strong>of</strong>t WindowsbasedFreeware for Population GeneticAnalysis, Version 1.32.[17] McDermott, J.M. and McDonald, B.A., 1993,Gene Flow in Plant Pathosystems, Ann. Rev.Phy<strong>to</strong>pathol. 31: 353-373.[18] Exc<strong>of</strong>fier, L., Laval, G. and Schneider, S.,2005, Arlequin (version 3.0): An IntegratedS<strong>of</strong>tware Package for Population GeneticsData Analysis, Evol. Bioinf. Online 1: 47-50.[19] Lessa, E.P., 1992, Rapid Surveying <strong>of</strong> DNASequence Variation in Natural Populations,Mol. Biol. Evol. 9: 323-330.[20] Comeron, J.M. and Kreitman, M., 2000, TheCorrelation Between Intron Length andRecombination in Drosophila: DynamicEquilibrium between Mutational and SelectiveForces, Genetics 156: 1175-1190.[21] Lynch, M., 2002, Intron Evolution as aPopulation-genetic Process, Proc. Nat. Acad.Sci. USA 99: 6118-6123.[22] Ming, H., Fang-min, X., Li-yun, C., Xiangqian,Z., Jojee, L. and Madonna, D., 2010,Comparative Analysis <strong>of</strong> Genetic Diversityand Structure in Rice Using <strong>ILP</strong> and SSR<strong>Marker</strong>s, Rice Sci. 17: 257-268.[23] Basha, S. and Sujatha, M., 2007, Inter andIntra-population Variability <strong>of</strong> <strong>Jatropha</strong> <strong>curcas</strong>(L.) Characterized by RAPD and ISSR<strong>Marker</strong>s and <strong>Development</strong> <strong>of</strong> PopulationspecificSCAR <strong>Marker</strong>s, Euphytica 156: 375-386.81


20 1 ก - 2555[24] Ganesh, R.S., Parthiban, K., Senthil, K.R.,Thiruvengadam, V. and Paramathma, M.,2008, Genetic Diversity among <strong>Jatropha</strong>Species as Revealed by RAPD <strong>Marker</strong>s, Gen.Res. Crop Evol. 55: 803-809.[25] Sirithunya, P. and Ukoskit, K., 2010,Population Genetic Structure and GeneticDiversity <strong>of</strong> <strong>Jatropha</strong> <strong>curcas</strong> Germplasm asInvestigated by 5′-anchored Simple SequenceRepeat Primers, J. Plant Sci. Biotech. 13: 147-153.[26] Sun, Q., Li, L., Li, Y., Wu, G. and Ge, X.,2008, SSR and AFLP <strong>Marker</strong>s Reveal LowGenetic Diversity in the Bi<strong>of</strong>uel Plant <strong>Jatropha</strong><strong>curcas</strong> in China, Crop Sci. 48: 1865-1871.[27] Ratree, S., 2004, A Preliminary Study onPhysic Nut (<strong>Jatropha</strong> <strong>curcas</strong> L.) in Thailand,Pakistan J. Biol. Sci. 7: 1620-1623.82

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