Users Guide - Facultad de Ciencias

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8How to Display a 2D spectrum in Image Mode . . . . . . . . . . . . . . . . . . 151How to Display a 2D Spectrum in Oblique Mode . . . . . . . . . . . . . . . . 151How to Rotate a 2D Spectrum in Oblique Mode . . . . . . . . . . . . . . . . . 153INDEXHow to Switch between Displaying Positive and Negative levels . . . . 153Chapter 10 3D Display . . . . . . . . . . DONE . . . . . . . . . . . . INDEX . . . . . . . . . . . . . . . . . . . . . . . 15510.1 Plane Display Mode. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 155How to Switch to 2D Plane Display . . . . . . . . . . . . . . . . . . . . . . . . . . . 156How to Display various Plane Orientations . . . . . . . . . . . . . . . . . . . . . 156How to Display various Plane Positions (numbers) . . . . . . . . . . . . . . . 15710.2 Cube Display Mode . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 157How to Display the 3D Cube . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 157How to Rotate the 3D Cube . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 158How to Scale Up/Down the 3D Cube . . . . . . . . . . . . . . . . . . . . . . . . . . 158How to Reset the Cube Size and Orientation . . . . . . . . . . . . . . . . . . . . 158How to Switch Depth Cueing on/off . . . . . . . . . . . . . . . . . . . . . . . . . . 159How to Display a Cube Front or Side view . . . . . . . . . . . . . . . . . . . . . 15910.3 Using the Tab bar . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 159Chapter 11 1D Interactive Manipulation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16111.1 1D Interactive Phase Correction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 161How to Switch to Phase Correction Mode . . . . . . . . . . . . . . . . . . . . . . 161How to Perform a Typical 1D Interactive Phase Correction . . . . . . . . 162How to Set the Phase Pivot Point . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 162How to Perform Default Zero Order Phase Correction . . . . . . . . . . . . 163How to Perform Interactive Zero Order Phase Correction . . . . . . . . . . 163How to Perform Interactive First Order Phase Correction . . . . . . . . . . 163How to Perform 90, -90 or 180° Zero Order Phase Correction . . . . . . 163How to Reset the Phase to the Original Values . . . . . . . . . . . . . . . . . . 163How to Change the Mouse Sensitivity . . . . . . . . . . . . . . . . . . . . . . . . . 163How to Return from Phase Correction Mode with/without Save . . . . . 16411.2 1D Interactive Integration . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 164How to Switch to Integration Mode . . . . . . . . . . . . . . . . . . . . . . . . . . . 165How to Define Integral Regions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 166How to Select/Deselect Integral Regions . . . . . . . . . . . . . . . . . . . . . . . 166How to Read Integral Regions from Disk . . . . . . . . . . . . . . . . . . . . . . . 167How to Perform Interactive Bias and Slope Correction . . . . . . . . . . . . 168How to Set the Limit for Bias Determination . . . . . . . . . . . . . . . . . . . . 169How to Change the Mouse Sensitivity . . . . . . . . . . . . . . . . . . . . . . . . . 169How to Calibrate/Normalize Integrals . . . . . . . . . . . . . . . . . . . . . . . . . 169How to Scale Integrals with respect to Different Spectra . . . . . . . . . . . 170How to Delete Integral Regions from the Display . . . . . . . . . . . . . . . . 170How to Scale Selected Integrals . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 171
How to Move the Integral Trails Up/Down . . . . . . . . . . . . . . . . . . . . . 172How to Cut Integral Regions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 172HowINDEXto Save Integral Regions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 172How to Undo the Last Region Operation . . . . . . . . . . . . . . . . . . . . . . . 173How INDEX to Return from DONE the Integration Mode with/without Save . . . . . . . 17311.3 1D Interactive Calibration . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 173How to Switch to Calibration Mode . . . . . . . . . . . . . . . . . . . . . . . . . . . 173How to Calibrate a Spectrum Interactively . . . . . . . . . . . . . . . . . . . . . . 17411.4 1D Multiple Display . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 175How Switch to Multiple Display Mode and Read Multiple Spectra . . 175How to Select/Deselect Datasets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 178How to Remove a Dataset from Multiple Display . . . . . . . . . . . . . . . . 178How to Display the Sum or Difference Spectra . . . . . . . . . . . . . . . . . . 179How to Save the Sum or Difference Spectra . . . . . . . . . . . . . . . . . . . . 179How to Display the Next/Previous Name/Expno . . . . . . . . . . . . . . . . . 179How to Toggle between Superimposed and Stacked Display . . . . . . . 180How to Shift and Scale Individual Spectra . . . . . . . . . . . . . . . . . . . . . . 180How to Switch on/off the Display of Datapaths and Scaling Factors . . 181How to Return from Multiple Display mode . . . . . . . . . . . . . . . . . . . . 182How to Set the Colors of the 1 st , 2 nd , .. Dataset . . . . . . . . . . . . . . . . . . 18211.5 1D Interactive Baseline Correction . . . . . . . . . . . . . . . . . . . . . . . . . . . . 182How to Switch to Baseline Correction Mode . . . . . . . . . . . . . . . . . . . . 182How to Perform Polynomial Baseline Correction . . . . . . . . . . . . . . . . 183How to Perform Sine Baseline Correction . . . . . . . . . . . . . . . . . . . . . . 183How to Perform Exponential Baseline Correction . . . . . . . . . . . . . . . . 184How to Preview the Baseline Corrected Spectrum . . . . . . . . . . . . . . . . 184How to Reset the Baseline Correction Line . . . . . . . . . . . . . . . . . . . . . 185How to Change the Mouse Sensitivity . . . . . . . . . . . . . . . . . . . . . . . . . 185How to Save the Baseline Correction and/or Return . . . . . . . . . . . . . . 185How to Perform Cubic Spline Baseline correction . . . . . . . . . . . . . . . . 185How to Delete Spline Baseline Points from the screen . . . . . . . . . . . . 186How to Return from Cubic Spline Baseline mode with/without Save . 18711.6 1D Interactive Peak Picking. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 187How to Switch to Peak Picking Mode . . . . . . . . . . . . . . . . . . . . . . . . . 188How to Define New Peak Picking Ranges . . . . . . . . . . . . . . . . . . . . . . 188How to Change Peak Picking Ranges . . . . . . . . . . . . . . . . . . . . . . . . . . 189How to Pick Peaks in Peak Picking Ranges only . . . . . . . . . . . . . . . . . 189How to Delete all Peak Picking Ranges . . . . . . . . . . . . . . . . . . . . . . . . 189How to Define Peaks Manually . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 190How to Pick Peaks Semi-Automatically . . . . . . . . . . . . . . . . . . . . . . . . 190How to Delete Peaks from the Peak List . . . . . . . . . . . . . . . . . . . . . . . 1909
Page 1 and 2: TOPSPINUsers GuideCopyright (C) 200
Page 3 and 4: Chapter 1 Getting Started . . . . .
Page 5 and 6: How to Automatically Select the fir
Page 7: How to Display the FID . . . . . .
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Page 19 and 20: Getting Started 19you to install pu
Page 21 and 22: Getting Started 212. Right-click an
Page 23 and 24: Getting Started 23Any Fid or a spec
Page 25 and 26: Getting Started 25task mathematical
Page 27 and 28: Chapter 2The TOPSPIN Interface2.1 T
Page 29 and 30: The TOPSPIN Interface 29• can be
Page 31 and 32: The TOPSPIN Interface 31Switch to p
Page 33 and 34: The TOPSPIN Interface 33Buttons for
Page 35 and 36: The TOPSPIN Interface 35INDEXINDEXD
Page 37 and 38: The TOPSPIN Interface 37Focus in th
Page 39 and 40: The TOPSPIN Interface 392.6 Help in
Page 41 and 42: The TOPSPIN Interface 412.7 User De
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Page 45 and 46: Trouble Shooting 45window:INDEXINDE
Page 47 and 48: Trouble Shooting 473.3 How to Show
Page 49 and 50: Chapter 4Dataset Handling4.1 The To
Page 51 and 52: Dataset Handling 51entry to define,
Page 53 and 54: Dataset Handling 53Note that collap
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Dataset Handling 59INDEXINDEXDONEFi
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Dataset Handling 633. In the appear
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Dataset Handling 652. Specify a pro
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Dataset Handling 671. Click File "
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Dataset Handling 69INDEXINDEXDONEYo
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Dataset Handling 71To select multip
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Dataset Handling 75! Right-click in
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Dataset Handling 77data are consist
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80 Parameter Handlingfor 2D data, t
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82 Parameter Handlings mc2Note that
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84 Parameter Handling! Use the scro
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Chapter 6Data Processing6.1 Interac
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Data Processing 89INDEXINDEXDONEFig
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Data Processing 91program, just ent
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Data Processing 93Browse for existi
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Chapter 7Printing/Exporting Data7.1
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Printing/Exporting Data 97Use plot
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Printing/Exporting Data 997.2 Expor
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102 1D Displaydatafieldtitle barTab
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104 1D Display8.3 Changing the Disp
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106 1D Displayor! Click one of the
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108 1D DisplayStatus parameter disp
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110 1D DisplayThis allows you to ed
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112 1D Display• Export...Export s
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114 1D DisplayINDEXDONEINDEXFigure
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116 1D DisplayRange (F1) to : the r
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118 1D Display2. Right-click any in
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120 1D Display• Expand allExpand
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122 1D DisplayRemove the selected i
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124 1D DisplayHow to Display the FI
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126 1D Display8.6 Show Display Prop
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128 1D DisplayHow to Display the Ma
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130 1D DisplayINDEXDONEINDEXThe con
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Chapter 92D Display9.1 The 2D Data
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2D Display 135orIncrease/decrease t
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2D Display 137b) Click OKRetrieve p
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2D Display 139INDEXINDEXDONEHere yo
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2D Display 141INDEXINDEXDONEHow to
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2D Display 143INDEXINDEXDONEThis di
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2D Display 145With the spectrum ove
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2D Display 147INDEXINDEXDONEFigure
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2D Display 149How to Set the 2D Con
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2D Display 151pressing Alt+PageUp:!
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2D Display 153:INDEXINDEXDONEFigure
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156 3D DisplayINDEXDONEINDEXFigure
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158 3D DisplayINDEXDONEINDEXHow to
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160 3D Displaytab will display the
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162 1D Interactive Manipulation11.1
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164 1D Interactive ManipulationIncr
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166 1D Interactive ManipulationHow
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168 1D Interactive ManipulationINDE
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170 1D Interactive Manipulation3. E
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Chapter 122D Interactive Manipulati
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2D Interactive Manipulation 195INDE
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2D Interactive Manipulation 197Note
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2D Interactive Manipulation 199unti
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2D Interactive Manipulation 201nucl
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2D Interactive Manipulation 203How
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2D Interactive Manipulation 205Fig.
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2D Interactive Manipulation 207INDE
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2D Interactive Manipulation 209! cl
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Chapter 13Data Window Handling13.1
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.Data Window Handling 213INDEXINDEX
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Data Window Handling 215INDEXINDEXD
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Data Window Handling 217or! Click W
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Data Window Handling 219• Each cu
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222 Analysis14.2 1D Signal to Noise
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224 Analysis3. Enter new limit valu
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226 AnalysisINDEXDONEINDEXFigure 14
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228 Analysisboxes:• All for all q
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230 Analysisor! Click the radio but
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232 Analysis2. Click Saveto save al
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234 AnalysisCQ(Quad) - Quadrupolar
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ES238 AnalysisINDEXDONEINDEXFigure
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240 Analysis• Click the Setup but
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242 Analysistoolbar. Fig. 14.11 sho
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244 Analysispeak picking is require
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246 Analysis1. Click the button (it
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248 AnalysisSelect the previous lev
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252 Analysisshown in Fig. 14.18.IND
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Chapter 15AcquisitionThis chapter d
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Acquisition 257required parameters.
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Acquisition 259Set SFO1, O1, O2 and
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Acquisition 261INDEXINDEXDONEFigure
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Acquisition 26315.5 LockingThe lock
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Acquisition 269The dataset will app
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Acquisition 271opens two extra butt
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Acquisition 275where you can enter
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Acquisition 277INDEXINDEXDONEHere,
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Acquisition 281How to Calculate the
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Acquisition 283and hard pulse. The
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Acquisition 285• is set to the fi
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Acquisition 287A minimum of two sha
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Acquisition 289and selected a phase
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Acquisition 293to 90° and the Type
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Acquisition 295• Enter Total Rota
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Acquisition 29714.Click OKINDEXINDE
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300 Configuration/AutomationHow to
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302 Configuration/Automationnow. Wa
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304 Configuration/AutomationHow to
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Chapter 17Remote Control17.1 Remote
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Remote Control 309INDEXINDEXDONEFig
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Remote Control 311network traffic.
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314 User Preferences(see Fig. 18.1)
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316 User PreferencesWindows 2000, t
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318 User Preferences3. Click the Ch
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320 User Preferences• The value a
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322 User Preferences1. Click Option
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324 User Preferencesfrom the appear
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326 User Preferences3. Set the Stat
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Chapter 19User ExtensionsTOPSPIN of
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User Extensions 331int first, max;c
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User Extensions 333of the users pro
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User Extensions 335Add User-Defined
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User Extensions 337INDEXINDEXDONEFi
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User Extensions 339user properties
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IndexSymbols*2 command 31, 37, 104,
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I-3font 321in multiple display mode
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I-5user 19, 50, 56variables 68datas
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I-7extend the Topspin functionality
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I-9baseline points 186Bruker AU pro
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I-11mode 1D 188ranges in 1D 189peak
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I-13color scheme 318cubic spline ba
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I-15peak labels 127spectra 21title
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