marker-assisted selection in wheat

Chapter 3 – Molecular markers for use in plant molecular breeding and germplasm evaluation 43effect of specific alleles on a phenotypecan be monitored with relative precision.As all this information is assembled andorganized in databases that provide easyquerying capabilities for plant breeders,breeders will take advantage of the powerthat comes from the application of genomebased strategies for plant improvement.ReferencesAkagi, H., Yokozeki, Y., Inagaki, A. & Fujimura, T.Y. 1996. Microsatellite DNA markers for ricechromosomes. Theor. Appl. Genet. 93: 1071–1077.Aparicio, S., Chapman, J., Stupka, E., Putman, N., Chia, J.M., Dehal, P., Christoffels, A., Rash,S., Hoon, S., Smit, A., Gelpke, M.D.S., Roach, J., Oh, T., Ho, I.Y., Wong, M., Detter, C.,Verhoef, F., Predki, P., Tay, A., Lucas, S., Richardson, P., Smith, S.F., Clark, M.S., Edwards,Y.J.K., Doggett, N., Zharkikh, A., Tavtigian, S.V., Pruss, D., Barnstead, M., Evans, C., Baden,H., Powell, J., Glusman, G., Rowen, L., Hood, L., Tan, Y.H., Elgar, G., Hawkins, T., Venkatesh,B., Rokhsar, D. & Brenner, S. 2002. Whole-genome shotgun assembly and analysis of the genomeof Fugu rubripes. Science 297: 1301–1310.Aranzana, M.J., Pineda, A., Cosson, P., Dirlewanger, E., Ascasibar, J., Cipriani, G., Ryder, C.D.,Testolin, R., Abbott, A., King, G.J., Iezzoni, A.F. & Arus, P. 2003. A set of simple-sequence repeat(SSR) markers covering the Prunus genome. Theor. Appl. Genet. 106: 819–825.Barrett, M.T., Scheffer, A., Ben-Dor, A., Sampas, N., Lipson, D., Kincaid, R., Tsang, P., Curry,B., Baird, K., Meltzer, P.S., Yakhini, Z., Bruhn, L. & Laderman, S. 2004. Comparative genomichybridization using oligonucleotide microarrays and total genomic DNA. Proc. Nat. Acad. Sci.USA 101: 17765–17770.Blair, M.W. & McCouch, S.R. 1997. Microsatellite and sequence-tagged site markers diagnostic forthe rice bacterial leaf blight resistance gene xa-5. Theor. Appl. Genet. 95: 174-184.Blair, M.W., Panaud O. & McCouch, S.R. 1999. Inter-simple sequence repeat (ISSR) amplification foranalysis of microsatellite motif frequency and fingerprinting in rice (Oryza sativa L.). Theor. Appl.Genet. 98: 780–792.Borevitz, J. O., Liang, D., Plouffe, D., Chang, H.S., Zhu, T., Weigel, D., Berry, C.C., Winzeler, E.& Chory, J. 2003. Large-scale identification of single-feature polymorphisms in complex genomes.Genome Res. 13: 513–523.Brondani, C., Rangel, N., Brondani V. & Ferreira, E. 2002. QTL mapping and introgression ofyield-related traits from Oryza glumaepatula to cultivated rice (Oryza sativa) using microsatellitemarkers. Theor. Appl. Genet. 104: 1192–1203.Bruskiewich, R.M., Cosico, A.B., Eusebio, W., Portugal, A.M., Ramos, L.M., Reyes, M.T., Sallan,M.A., Ulat, V.J., Wang, X., McNally, K.L., Sackville Hamilton, R. & McLaren, C.G. 2003.Linking genotype to phenotype: the International Rice Information System (IRIS). Bioinformatics19 Suppl 1: i63–i65.Bryan, G.T., Wu, K.S., Farrall, L., Jia, Y., Hershey, H.P., McAdams, S.A., Faulk, K.N., Donaldson,G.K., Tarchini, R. & Valent, B. 2000. A single amino acid difference distinguishes resistant andsusceptible alleles of the rice blast resistance gene Pi-ta. The Plant Cell 12: 2033–2046.Casa, A.M., Brouwer, C., Nagel, A., Wang, L., Zhang Q., Kresovich, S. & Wessler, S.R. 2000.Inaugural article: the MITE family heartbreaker (Hbr): molecular markers in maize. Proc. Nat.Acad. Sci. USA 97: 10083–10089.