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marker-assisted selection in wheat

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Chapter 16 – Possibilities for <strong>marker</strong>-<strong>assisted</strong> <strong>selection</strong> <strong>in</strong> aquaculture breed<strong>in</strong>g schemes 325McConnell, S.K.J., Beynon, C., Leamon, J. & Skib<strong>in</strong>ski, D.O.F. 2000. Microsatellite <strong>marker</strong>-basedgenetic l<strong>in</strong>kage maps of Oreochromis aureus and O. niloticus (Cichlidae): extensive l<strong>in</strong>kage groupsegment homologies revealed. Anim. Genet. 31: 214–216.McDonald, G.J., Danzmann, R.G. & Ferguson, M.M. 2004. Relatedness determ<strong>in</strong>ation <strong>in</strong> theabsence of pedigree <strong>in</strong>formation <strong>in</strong> three cultured stra<strong>in</strong>s of ra<strong>in</strong>bow trout (Oncorhynchus mykiss).Aquaculture 233: 65–78.Meuwissen, T.H.E. 1997. Maximiz<strong>in</strong>g the response of <strong>selection</strong> with a predef<strong>in</strong>ed rate of <strong>in</strong>breed<strong>in</strong>g.J. Anim. Sci. 75: 934–940.Meuwissen, T.H.E. & Sonesson, A.K. 1998. Maximiz<strong>in</strong>g the response of <strong>selection</strong> with a predef<strong>in</strong>edrate of <strong>in</strong>breed<strong>in</strong>g – overlapp<strong>in</strong>g generations. J. Anim. Sci. 76: 2575–2583.Meuwissen, T.H.E. & Sonesson, A.K. 2004. Genotype-<strong>assisted</strong> optimum contribution <strong>selection</strong> tomaximise <strong>selection</strong> response over a specified time period. Genet. Res. 84: 109–116.Meuwissen, T.H.E., Karlsen, A., Lien, S., Olsaker, I. & Goddard, M.E. 2002. F<strong>in</strong>e mapp<strong>in</strong>g of aquantitative trait locus for tw<strong>in</strong>n<strong>in</strong>g rate us<strong>in</strong>g comb<strong>in</strong>ed l<strong>in</strong>kage and l<strong>in</strong>kage disequilibrium mapp<strong>in</strong>g.Genetics 161: 373–379.Moen, T., Hoyheim, B., Munck, H. & Gomez-Raya, L. 2004a. A l<strong>in</strong>kage map of Atlantic salmon(Salmo salar) reveals an uncommonly large difference <strong>in</strong> recomb<strong>in</strong>ation rate between the sexes.Anim. Genet. 35: 81–92.Moen, T., Agresti, J.J., Cnaani, A., Moses, H., Famula, T.R., Hulata, G., Gall, G.A.E. & May, B.2004b. A genome scan of a four-way tilapia cross supports the existence of a quantitative trait locusfor cold tolerance on l<strong>in</strong>kage group 23. Aquaculture 35: 893–904.Moen, T., Fjalestad, K.T., Munck, H. & Gomez-Raya, L. 2004c. A multistage test<strong>in</strong>g strategy fordetection of quantitative trait loci affect<strong>in</strong>g disease resistance <strong>in</strong> Atlantic salmon. Genetics 167:851–858.Moen, T., Hayes, B., Sonesson, A.K., Lien, S., Høyheim, B., Munck, H. & Meuwissen, T.H.E. 2006.Mapp<strong>in</strong>g of a quantitative trait loci for resistance aga<strong>in</strong>st <strong>in</strong>fectious salmon anemia <strong>in</strong> Atlanticsalmon (Salmo salar): compar<strong>in</strong>g survival models with b<strong>in</strong>ary models. Genetics. Submitted.Moore, S.S., Whan, V., Davis, G.P., Byrne, K., Hetzel, D.J.S. & Preston, N. 1999. The developmentand application of genetic <strong>marker</strong>s for the kuruma prawn (Penaeus japonicus). Aquaculture 173:19–32.Nakamura, K., Ozaki, A., Akutsu, T., Iwai., K., Sakamoto, T., Toshizaki, G. & Okamoto, N. 2001.Genetic mapp<strong>in</strong>g of the dom<strong>in</strong>ant alb<strong>in</strong>o locus <strong>in</strong> ra<strong>in</strong>bow trout (Oncorhynchus mykiss). Mol.Genet. Genom. 265: 687–93.Nichols, K.M., Bartholomew, J. & Thorgaard, G.H. 2003. Mapp<strong>in</strong>g multiple genetic loci associatedwith Ceratomyxa shasta resistance <strong>in</strong> Oncorhynchus mykiss. Dis. Aquat. Org. 56: 145–154.Nichols, K.M., Wheeler, P.A. & Thorgaard, G.H. 2004. Quantitative trait loci analyses for meristictraits <strong>in</strong> Oncorhynchus mykiss. Env. Biol. Fish. 69: 317–331.Nichols, K.M., Robison, B.D., Wheeler, P.A. & Thorgaard, G.H. 2000. Quantitative trait loci (QTL)associated with developmental rate <strong>in</strong> clonal Oncorhynchus mykiss stra<strong>in</strong>s. Aquaculture 209:233.Nichols, K.M., Young, W.P., Danzmann, R.G., Robison, B.D., Rexroad, C., Noakes, M., Phillips,R.B., Bentzen, P., Spies, I., Knudsen, K., Allendorf, F.W., Cunn<strong>in</strong>gham, B.M., Brunelli, J.,Zhang, H., Ristow, S., Drew, R., Brown, K.H., Wheeler, P.A. & Thorgaard, G.H. 2003. A consolidatedl<strong>in</strong>kage map for ra<strong>in</strong>bow trout (Oncorhynchus mykiss). Anim. Genet. 34: 102–115.Norris, A.T., Bradley, D.G. & Cunn<strong>in</strong>gham, E.P. 2000. Parentage and relatedness determ<strong>in</strong>ation <strong>in</strong>farmed Atlantic salmon (Salmo salar) us<strong>in</strong>g microsatellite <strong>marker</strong>s. Aquaculture 182: 73–83.

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