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Molecular taxonomy of the Alternaria and Ulocladium ... - CBS - KNAW

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274 G. S. de Hoog &R.HorréFigure 5. RFLP (ITS·AccII) <strong>of</strong> r<strong>and</strong>omly selected strains with ITS domain <strong>of</strong> about 570 bp (expected b<strong>and</strong>s at 578 <strong>and</strong> 468–9 + 105, resp.).A ¼ A. alternata <strong>CBS</strong> 603.78; B ¼ A. tenuissima <strong>CBS</strong> 918.96; C ¼ A. alternata <strong>CBS</strong> 795.92; F ¼ A. tenuissima <strong>CBS</strong> 879.95; G ¼ A. tenuissima <strong>CBS</strong> 880.95;I ¼ U. atrum <strong>CBS</strong> 103.47; K ¼ U. chartarum <strong>CBS</strong> 105.32; L ¼ U. atrum <strong>CBS</strong> 104.21; M ¼ A. alternata <strong>CBS</strong> 750.68; N ¼ U. chartarum <strong>CBS</strong> 199.67;O ¼ A. alternata <strong>CBS</strong> 916.96; P ¼ U. atrum <strong>CBS</strong> 102059; Q ¼ A. longipes <strong>CBS</strong> 540.94; R ¼ A. alternata <strong>CBS</strong> 879.95; M ¼ molecular weight marker(Roche).Table 8.Diagnostics <strong>of</strong> clinically relevant <strong>Alternaria</strong>, Botryomyces <strong>and</strong> <strong>Ulocladium</strong> species in summary1a ITS amplicon about 570 bp. 21b ITS amplicon about 600 bp. 52a AccII digestion largest b<strong>and</strong> 578 bp. 32b AccII digestion largest b<strong>and</strong> 467–468 bp. 43a TaqI 114 bp present; conidia obclavate, in long, branched chains. A. alternata3b TaqI 114 bp absent; conidia meristematic, not in chains. A chlamydospora4a Conidia spherical, cruciately septate; conidia never in chains. U. atrum4b Conidia ovoidal, most with three transverse septa; some <strong>of</strong> <strong>the</strong> conidia in short chains. U. chartarum5a HinfI digestion largest b<strong>and</strong> 261 bp. U. botrytis5b HinfI digestion largest b<strong>and</strong> 310–316 bp. 66a HinfI digestion smallest b<strong>and</strong>s 117 <strong>and</strong> 164 bp. A. infectoria6b HinfI digestion smallest b<strong>and</strong> 280 bp. B. caespitosusare identical. In <strong>the</strong> ITS distance tree (Fig. 1)U. chartarum is distinguishable as a paraphyleticbranch at a distance <strong>of</strong> three informative positions,but no restriction enzyme is available for <strong>the</strong>diagnostic sites. A dichotomous key to <strong>the</strong> medicallyimportant species considered in this study can beprepared using <strong>the</strong>se molecular characters for rapididentification (Table 8).AcknowledgementsThe authors thank E. G. Simmons for inspiringdiscussions <strong>and</strong> comments on <strong>the</strong> manuscript <strong>and</strong>provision <strong>of</strong> strains. P. Crous is acknowledged foruseful suggestions <strong>and</strong> kindly sharing unpublishedmaterial. B. M. Pryor, G. J. MacKay <strong>and</strong>M. Saito are thanked for providing informationon strains. We are grateful to R. C. Summerbell,Y. Gräser <strong>and</strong> D. Harmsen for comments on <strong>the</strong>manuscript, <strong>and</strong> to P. Mayser for strains <strong>and</strong>reprints. K. Luijsterburg, K. Luijk, S. de Busser<strong>and</strong> M. J. Figge are thanked for <strong>the</strong>ir technicalassistance.References1 Wilken-Jensen, K. & Gravesen, S. (1984) Atlas <strong>of</strong> Moulds inEurope Causing Respiratory Allergy. Copenhagen: Foundation<strong>of</strong> Allergy Research in Europe, ASK.2 Badillet, G. (1991) Les alternarioses cutanées. Revue de lalittérature. J. Mycol. Méd. 2, 59–71.3 Machet, L., January, V., Machet, M. C., Vaillant, L. &Lorette, G. (1996) Cutaneous alternariosis: role <strong>of</strong> corticosteroid-inducedcutaneous fragility. Dermatology 193, 342–344.4 Gerdsen, R., Uerlich, M., De Hoog, G. S., Bieber, T. &Horré, R. (2001) Sporotrichoid phaeohyphomycosis due to<strong>Alternaria</strong> infectoria. Br. J. Dermatol. 145, 484–486.5 De Hoog, G. S., Guarro, J., Gené, J. & Figueras, M. J. (2000).Atlas <strong>of</strong> Clinical Fungi, 2nd edn. Utrecht ⁄ Reus: Centraalbureauvoor Schimmelcultures ⁄ Universitat Rovira i Virgili.6 De Hoog, G. S., Uijth<strong>of</strong>, J. M. J., Gerrits van den Ende,A. H. G., Figge, M. J. & Weenink, X. O. (1997) ComparativerDNA diversity in medically significant fungi.Microbiol. Cult. Coll. 13, 39–48.mycoses 45, 259–276 (2002)

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